Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023827.1 Corchorus olitorius cultivar O-4 contig23860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26475

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--53
16
2.7
15
82
10
50
0
16
13
69
1.19
6277--6310
2
17.0
2
100
0
68
50
0
0
50
1.00
8247--8413
86
1.9
86
97
0
316
41
19
11
26
1.86
13236--13260
13
1.9
13
100
0
50
40
8
28
24
1.83
15506--15777
132
2.0
134
90
4
426
31
16
17
34
1.93
15623--15959
166
2.0
164
91
1
541
29
17
19
32
1.95
16670--16739
21
3.7
21
66
33
68
27
0
21
51
1.48
16659--16734
34
2.2
34
97
0
143
30
1
19
48
1.57
20743--20792
22
2.3
21
86
3
64
46
6
18
30
1.73
20992--21138
44
3.3
44
88
1
206
38
9
1
50
1.44
21030--21281
30
8.6
28
71
17
117
39
9
0
50
1.39
21052--21212
74
2.2
73
92
1
259
40
9
0
49
1.41
21126--21281
43
3.5
44
86
5
217
38
10
0
51
1.36
20988--21249
117
2.3
118
87
2
379
39
9
0
50
1.41
21029--21274
117
2.1
116
86
7
345
39
10
0
50
1.40
21856--21902
19
2.3
21
82
7
53
63
10
4
21
1.43
22375--22414
21
2.0
21
85
5
55
12
12
25
50
1.75
23709--23739
1
31.0
1
100
0
62
0
0
0
100
0.00
26176--26268
32
2.9
32
88
0
141
30
24
20
24
1.99

Tables:   1

The End!