Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023828.1 Corchorus olitorius cultivar O-4 contig23861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45862

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4114--4172
29
2.0
29
90
6
93
32
11
8
47
1.70
7268--7360
16
5.8
16
72
9
91
7
15
38
38
1.75
7254--7377
32
3.8
33
81
5
121
5
17
43
33
1.73
7348--7390
6
7.3
6
81
5
52
2
20
46
30
1.63
7349--7389
17
2.4
17
91
4
64
2
21
48
26
1.63
12914--12967
19
2.6
21
77
19
60
38
18
3
38
1.69
15659--17121
737
2.0
722
91
3
2367
33
14
20
31
1.93
22220--22270
24
2.1
24
100
0
102
37
13
7
41
1.74
28034--28065
11
2.8
12
86
13
50
43
15
9
31
1.78
31679--31715
16
2.2
17
90
4
58
21
16
0
62
1.33
34752--34823
27
2.7
27
84
0
81
20
15
29
34
1.93
37730--37776
22
2.2
22
84
3
60
48
6
14
29
1.69
37726--37776
21
2.4
21
83
3
66
49
5
17
27
1.70

Tables:   1

The End!