Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023830.1 Corchorus olitorius cultivar O-4 contig23863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15196

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3322--3351
16
1.9
16
93
6
53
36
3
13
46
1.60
8001--8050
15
3.5
15
79
17
61
40
8
14
38
1.75
8009--8052
13
3.2
13
81
9
52
45
6
13
34
1.70
8025--8058
12
2.8
12
87
12
52
38
5
17
38
1.74
10244--10764
64
8.0
64
89
2
722
34
14
24
26
1.94
10992--11110
50
2.4
49
83
8
141
33
12
31
22
1.91
10992--11366
127
3.0
127
95
0
687
33
12
28
25
1.92
11112--11210
50
2.0
50
87
0
144
31
12
30
26
1.92
11162--11310
77
1.9
77
83
2
192
34
12
24
28
1.91
11239--11364
50
2.5
50
87
2
173
32
12
28
26
1.93
11647--11715
27
2.6
27
90
2
104
18
17
24
39
1.92

Tables:   1

The End!