Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023835.1 Corchorus olitorius cultivar O-4 contig23868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30229

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2131--3686
327
4.8
319
80
7
1480
36
16
14
32
1.89
4144--4184
19
2.2
19
86
4
57
60
7
9
21
1.52
8471--8513
22
2.0
22
95
0
77
30
0
20
48
1.50
8801--8851
25
1.9
28
84
11
72
39
0
5
54
1.24
8850--8900
14
3.5
14
70
19
50
45
5
0
49
1.26
8856--8921
30
2.2
30
91
5
107
45
4
0
50
1.22
8880--8936
22
2.6
21
83
8
71
43
3
0
52
1.18
9413--9625
107
2.0
107
97
0
399
37
13
7
41
1.73
9561--9744
92
2.0
94
93
2
318
44
8
9
38
1.67
14963--15027
31
2.1
31
85
0
85
36
18
13
30
1.90
16350--16407
19
2.9
19
78
9
62
39
8
20
31
1.83
18005--18050
15
2.9
16
83
6
58
52
0
0
47
1.00
18215--18290
32
2.4
30
81
16
82
48
6
6
38
1.55
18697--18748
25
2.1
25
100
0
104
34
7
23
34
1.83
18957--18981
1
25.0
1
100
0
50
0
0
0
100
0.00
23493--24554
333
3.2
327
79
7
1095
38
15
14
32
1.87
26468--28498
653
3.1
649
87
5
2667
35
16
14
33
1.90
26468--28498
321
6.1
332
82
7
2404
35
16
14
33
1.90
28716--29746
320
3.1
329
79
7
1195
34
17
14
33
1.90

Tables:   1

The End!