Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023837.1 Corchorus olitorius cultivar O-4 contig23870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156220

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6132--6166
6
6.0
6
86
6
54
2
28
17
51
1.59
8839--8876
3
12.7
3
88
0
58
39
0
0
60
0.97
8819--8877
6
9.7
6
80
12
50
47
0
0
52
1.00
8883--8933
5
10.8
5
83
12
72
58
0
19
21
1.39
11152--11191
15
2.7
15
100
0
80
30
45
12
12
1.79
19846--19928
30
2.7
30
83
7
87
21
13
18
46
1.82
19982--20148
27
5.9
27
77
15
133
23
14
17
43
1.86
20204--20360
27
5.6
27
77
14
131
23
14
17
45
1.84
20258--20360
30
3.5
30
84
11
126
20
14
17
47
1.82
19837--20419
219
2.7
221
95
0
1055
29
15
16
38
1.89
20381--20439
31
1.9
31
93
3
102
50
15
11
22
1.76
20380--20450
30
2.3
31
85
2
99
50
14
9
25
1.73
20700--20725
13
2.0
13
100
0
52
30
7
7
53
1.57
27731--27808
39
2.0
40
94
2
140
11
14
6
67
1.39
28881--28923
21
2.0
21
86
13
61
58
0
0
41
0.98
28878--28923
23
2.0
24
88
12
71
58
0
0
41
0.98
29605--29630
2
13.0
2
100
0
52
50
0
0
50
1.00
31937--31962
6
4.3
6
100
0
52
19
15
19
46
1.85
44734--44788
27
2.0
27
96
0
101
23
36
25
14
1.93
44910--44965
3
18.7
3
96
0
103
33
1
0
64
1.04
53447--53481
18
1.9
18
88
0
52
22
20
2
54
1.58
67721--67780
30
2.0
30
100
0
120
13
16
26
43
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74069--74126
19
2.9
19
82
5
62
37
10
20
31
1.86
74751--74796
18
2.6
18
82
10
58
6
19
2
71
1.18
87294--87345
26
2.0
26
100
0
104
53
7
23
15
1.67
87410--87530
32
3.8
32
84
4
145
38
13
16
31
1.87
87410--87551
64
2.2
64
81
3
162
40
11
16
31
1.85
88498--88561
30
2.1
30
91
0
101
46
7
18
26
1.76
90073--90131
28
2.0
31
83
9
79
40
10
20
28
1.85
90082--90138
28
1.9
30
82
10
73
43
10
21
24
1.83
90082--90138
29
1.9
30
82
10
73
43
10
21
24
1.83
103012--103045
14
2.4
14
95
0
59
23
8
0
67
1.18
103073--103103
15
2.1
15
100
0
62
19
6
12
61
1.53
110843--110909
28
2.5
28
88
7
95
31
5
26
35
1.81
111275--111354
36
2.2
36
88
0
124
17
40
17
25
1.91
111291--111369
36
2.2
36
83
0
95
21
36
20
21
1.95
111865--111948
29
3.3
23
74
16
69
44
0
28
27
1.55
116318--116347
14
2.1
14
100
0
60
46
6
16
30
1.73
131895--131919
12
2.1
12
100
0
50
36
16
32
16
1.90
139587--139615
13
2.2
13
100
0
58
48
20
13
17
1.81
140139--140190
26
2.0
27
92
3
88
25
3
19
51
1.63
142295--142677
190
2.0
189
97
0
721
26
15
18
39
1.90
142970--143023
26
2.1
26
100
0
108
33
20
5
40
1.76
154019--155170
311
3.6
310
78
10
906
33
14
16
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155054--155456
197
2.0
200
85
6
550
35
12
16
34
1.87

Tables:   1

The End!