Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023851.1 Corchorus olitorius cultivar O-4 contig23884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128041

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--79
2
26.0
2
92
3
88
47
3
0
49
1.19
136--219
27
3.1
26
77
14
89
45
7
3
44
1.48
1002--1142
22
6.3
21
69
17
72
44
7
14
33
1.73
1002--1232
22
10.4
22
65
19
63
41
9
12
36
1.75
15649--15688
19
2.1
19
100
0
80
47
17
15
20
1.83
19529--19562
4
8.5
4
93
0
59
76
2
0
20
0.92
19522--19563
12
3.4
12
90
3
66
71
7
0
21
1.09
26771--26800
7
4.4
7
91
8
53
0
0
13
86
0.57
26771--26800
13
2.2
13
94
5
51
0
0
13
86
0.57
26787--26835
22
2.2
23
88
3
73
6
8
16
69
1.33
26836--27122
137
2.1
135
86
4
396
37
6
16
39
1.76
30427--30890
244
1.9
244
88
0
694
31
19
24
24
1.98
35973--36036
31
2.1
31
96
0
119
39
21
9
29
1.85
53804--53860
24
2.4
24
79
5
71
21
26
31
21
1.98
57905--57985
39
2.0
40
90
4
128
48
22
2
27
1.63
82738--82777
21
1.9
21
84
0
53
62
2
2
32
1.22
82748--82777
10
2.9
10
95
5
51
60
0
3
36
1.14
86989--87039
25
2.0
25
84
0
66
15
11
11
60
1.58
95513--95550
20
1.9
20
88
0
58
52
15
0
31
1.43
95513--95558
20
2.2
20
84
3
56
54
13
2
30
1.50
95615--95796
90
2.0
90
96
0
337
35
15
15
33
1.89
122634--122687
23
2.3
23
93
0
90
18
7
24
50
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127015--127045
11
2.9
11
95
4
55
0
0
6
93
0.35
127015--127044
15
1.9
16
93
6
53
0
0
6
93
0.35
127106--127356
26
9.7
26
95
0
416
24
10
30
33
1.90
127106--127492
52
7.3
52
86
7
528
24
10
30
33
1.90
127106--127492
78
4.9
78
85
8
528
24
10
30
33
1.90
127320--127392
36
2.0
36
91
0
119
21
13
27
36
1.92
127297--127418
61
2.0
61
90
3
192
23
13
27
35
1.92
127271--127444
86
2.0
88
89
4
273
24
11
28
35
1.90
127356--127492
26
5.3
26
88
2
197
24
10
30
33
1.90

Tables:   1

The End!