Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023852.1 Corchorus olitorius cultivar O-4 contig23885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78486
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2038 original size:34 final size:35
Alignment explanation
Indices: 2000--2065 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
1990 TTTTGCTCTG
*
2000 CATCATATAGTTCATTTT-TCAGTA-GGGTCATCTC
1 CATCATATAATTCATTTTCT-AGTAGGGGTCATCTC
2034 CATCATATAATTCATTTTCTAGTAGGGGTCAT
1 CATCATATAATTCATTTTCTAGTAGGGGTCAT
2066 GTAGTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 21 0.72
35 8 0.28
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (35 bp):
CATCATATAATTCATTTTCTAGTAGGGGTCATCTC
Found at i:2083 original size:26 final size:26
Alignment explanation
Indices: 2054--2478 Score: 684
Period size: 26 Copynumber: 16.6 Consensus size: 26
2044 TTCATTTTCT
*
2054 AGTAGGGGTCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2080 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2106 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2132 AATAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2157 AGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2182 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
* * *
2208 AGTACGGAACATATAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2234 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2260 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2286 AGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2311 AGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2336 AGTAGGGGTCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2362 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
*
2388 AGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2414 AGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2439 AGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTC
2464 AGTAGGGATCA-GTAG
1 AGTAGGGATCATGTAG
2479 GGTAACATGT
Statistics
Matches: 382, Mismatches: 14, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
25 150 0.39
26 232 0.61
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (26 bp):
AGTAGGGATCATGTAGTTGCATATTC
Found at i:2132 original size:52 final size:52
Alignment explanation
Indices: 2054--3197 Score: 1572
Period size: 52 Copynumber: 22.3 Consensus size: 52
2044 TTCATTTTCT
*
2054 AGTAGGGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * *
2106 AGTAGGGAACATGTAGTTGCATATTCAATAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
2157 AGTAGGG-TCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * *
2208 AGTACGGAACATATAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* *
2260 AGTAGGGAACATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
**
2311 AGTAGGG-TCATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
2362 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
2414 AGTAGGG-TCATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
2464 AGTAGGGATCAGTAGGGTAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCGTATTC
1 AGTA-GG----G-A---T--CATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* *
2527 AGTAGGGAACATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* *
2578 AGTAGGGAACATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * ** *
2629 AGTAGGGAACATGTCGTTGCATATTCAGTAGGGGTCATTTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
2681 AGTAGGGATCATTTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* **
2733 AGTAGGGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTA---GC-----C
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
2777 AGTAGAGG-TCATGTAGTTGCATATTCAGTAGGGAACATGTA---GC-----C
1 AGTAG-GGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
2821 AGTAGAGG-TCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
1 AGTAG-GGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * **
2873 CGTAGGGAACATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* **
2925 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * *
2977 AGTAGGGAACATGTAGTTGCATATTCAGTAGAGCACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
3029 AGTAGGG-TCATGTAGTTGCATATTCAGTAAGGAACATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* *
3080 AGTAGGGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTT
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
* * * *
3132 AGTAGAG-TCATGTAGTTGCATATTCCGTAGGGGAGATGTAGTTGCATATTC
1 AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
3183 AGTAGGG-TCATGTAG
1 AGTAGGGATCATGTAG
3198 AAATTAATTA
Statistics
Matches: 1005, Mismatches: 58, Indels: 59
0.90 0.05 0.05
Matches are distributed among these distances:
44 81 0.08
45 2 0.00
47 2 0.00
49 2 0.00
50 68 0.07
51 324 0.32
52 476 0.47
55 1 0.00
57 1 0.00
58 1 0.00
60 1 0.00
62 26 0.03
63 20 0.02
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (52 bp):
AGTAGGGATCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
Found at i:2349 original size:154 final size:154
Alignment explanation
Indices: 2054--3197 Score: 1630
Period size: 154 Copynumber: 7.4 Consensus size: 154
2044 TTCATTTTCT
**
2054 AGTAGGGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
*
2119 TAGTTGCATATTCAATAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAG
66 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAG
2184 TAGGGAACATGTAGTTGCATATTC
131 TAGGGAACATGTAGTTGCATATTC
* *
2208 AGTACGGAACATATAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
2273 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAG
66 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAG
**
2338 TAGGGGTCATGTAGTTGCATATTC
131 TAGGGAACATGTAGTTGCATATTC
*
2362 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGG-TCATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
2426 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGATCAGTAGGGTAACATGTAG
66 TAGTTGCATATTCAGTAGGGTCATGTAGTTGC--A-T-A-T-----TCAGTAGGGT--CATGTAG
*
2491 TTGCATATTCAGTAGGGAACATGTAGTTGCGTATTC
119 TTGCATATTCAGTAGGGAACATGTAGTTGCATATTC
*
2527 AGTAGGGAACATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTCAGTAGGGAACATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
* *
2591 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGAACATGTCGTTGCATATTCA
66 TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATTCA
** *
2656 GTAGGGGTCATTTAGTTGCATATTC
130 GTAGGGAACATGTAGTTGCATATTC
* * **
2681 AGTAGGGATCATTTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGGTCATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
2746 TAGTTGCATATTCAGTAGGGGTCATGTA---GC-----CAGTAGAGGTCATGTAGTTGCATATTC
66 TAGTTGCATATTCAGTA-GGGTCATGTAGTTGCATATTCAGTAG-GGTCATGTAGTTGCATATTC
2803 AGTAGGGAACATGTA---GC-----C
129 AGTAGGGAACATGTAGTTGCATATTC
* *
2821 AGTAGAGG-TCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCCGTAGGGAACAT
1 AGTAG-GGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACAT
*
2885 GTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATT
65 GTAGTTGCATATTCAGTA-GGGTCATGTAGTTGCATATTCAGTAGGG-TCATGTAGTTGCATATT
**
2950 CAGTAGGGGTCATGTAGTTGCATATTC
128 CAGTAGGGAACATGTAGTTGCATATTC
* * *
2977 AGTAGGGAACATGTAGTTGCATATTCAGTAGAGCACATGTAGTTGCATATTCAGTAGGG-TCATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
**
3041 TAGTTGCATATTCAGTAAGGAACATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTC
66 TAGTTGCATATTCAGT-AGGGTCATGTAGTTGCATATTCAGTA-GGGTCATGTAGTTGCATATTC
*
3106 AGTAGGGAACATGTAGTTGCATATTT
129 AGTAGGGAACATGTAGTTGCATATTC
* * * * * *
3132 AGTAGAG-TCATGTAGTTGCATATTCCGTAGGGGAGATGTAGTTGCATATTCAGTAGGG-TCATG
1 AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
3195 TAG
66 TAG
3198 AAATTAATTA
Statistics
Matches: 897, Mismatches: 55, Indels: 76
0.87 0.05 0.07
Matches are distributed among these distances:
140 87 0.10
141 2 0.00
143 2 0.00
145 2 0.00
147 2 0.00
148 70 0.08
149 2 0.00
151 2 0.00
153 38 0.04
154 327 0.36
155 146 0.16
156 68 0.08
157 1 0.00
158 1 0.00
160 1 0.00
161 1 0.00
162 1 0.00
163 11 0.01
164 24 0.03
165 109 0.12
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (154 bp):
AGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGAACATG
TAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAG
TAGGGAACATGTAGTTGCATATTC
Found at i:2493 original size:37 final size:35
Alignment explanation
Indices: 2437--2508 Score: 126
Period size: 37 Copynumber: 2.0 Consensus size: 35
2427 AGTTGCATAT
2437 TCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGA
1 TCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGA
2472 TCAGTAGGGTAACATGTAGTTGCATATTCAGTAGGGA
1 TCAGTAGGGT--CATGTAGTTGCATATTCAGTAGGGA
2509 ACATGTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 10 0.29
37 25 0.71
ACGTcount: A:0.28, C:0.11, G:0.31, T:0.31
Consensus pattern (35 bp):
TCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGA
Found at i:2516 original size:26 final size:26
Alignment explanation
Indices: 2472--3197 Score: 901
Period size: 26 Copynumber: 27.7 Consensus size: 26
2462 TCAGTAGGGA
2472 TCAGTAGGGTAACATGTAGTTGCATAT
1 TCAGTAGGG-AACATGTAGTTGCATAT
*
2499 TCAGTAGGGAACATGTAGTTGCGTAT
1 TCAGTAGGGAACATGTAGTTGCATAT
2525 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
2551 TCAGTAGGG-TCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
2576 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
2602 TCAGTAGGG-TCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
2627 TCAGTAGGGAACATGTCGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
** *
2653 TCAGTAGGGGTCATTTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
* *
2679 TCAGTAGGGATCATTTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
2705 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
**
2731 TCAGTAGGGGTCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
** ** * * *
2757 TCAGTAGGGGTCATGTAGCCAGTAGAGG
1 TCAGTAGGGAACATGTAG-TTGCATA-T
* * *
2785 TCATGTAGTTGCATATTCA-GTAG-GGAACATGTAG
1 TCA-GTAG--GGA-A--CATGTAGTTG--CA--TAT
* *
2819 CCAGTAGAGG-TCATGTAGTTGCATAT
1 TCAGTAG-GGAACATGTAGTTGCATAT
2845 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
2871 TCCGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
**
2897 TCAGTAGGGGTCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
2923 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
**
2949 TCAGTAGGGGTCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
2975 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
* *
3001 TCAGTAGAGCACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
3027 TCAGTAGGG-TCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
3052 TCAGTAAGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
**
3078 TCAGTAGGGGTCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
3104 TCAGTAGGGAACATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
* * *
3130 TTAGTAGAG-TCATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
* * *
3155 TCCGTAGGGGAGATGTAGTTGCATAT
1 TCAGTAGGGAACATGTAGTTGCATAT
*
3181 TCAGTAGGG-TCATGTAG
1 TCAGTAGGGAACATGTAG
3198 AAATTAATTA
Statistics
Matches: 613, Mismatches: 67, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
25 100 0.16
26 467 0.76
27 12 0.02
28 7 0.01
29 8 0.01
30 1 0.00
31 2 0.00
32 1 0.00
33 9 0.01
34 5 0.01
35 1 0.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (26 bp):
TCAGTAGGGAACATGTAGTTGCATAT
Found at i:2781 original size:18 final size:18
Alignment explanation
Indices: 2758--2792 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2748 GTTGCATATT
*
2758 CAGTAGGGGTCATGTAGC
1 CAGTAGAGGTCATGTAGC
2776 CAGTAGAGGTCATGTAG
1 CAGTAGAGGTCATGTAG
2793 TTGCATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.14, G:0.37, T:0.23
Consensus pattern (18 bp):
CAGTAGAGGTCATGTAGC
Found at i:2795 original size:44 final size:44
Alignment explanation
Indices: 2732--2966 Score: 222
Period size: 44 Copynumber: 5.0 Consensus size: 44
2722 GTTGCATATT
*
2732 CAGTAGGGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTAGC
1 CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTAGC
**
2776 CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGC
1 CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTAGC
** *
2820 CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGAACATGTAGTTG
1 CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTAG--C
*
2866 CA-TATTCCGTAGGGAACATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGC
1 CAGTA----G-A-GG-TCATGTAGTTGCATATTCAGTAGGGGTCATGTA---GC
*
2919 ATATTCAGTAG-GGAACATGTAGTTGCATATTCAGTAGGGGTCATGTAG
1 -----CAGTAGAGG-TCATGTAGTTGCATATTCAGTAGGGGTCATGTAG
2967 TTGCATATTC
Statistics
Matches: 165, Mismatches: 8, Indels: 31
0.81 0.04 0.15
Matches are distributed among these distances:
44 84 0.51
45 2 0.01
46 2 0.01
49 2 0.01
50 1 0.01
51 2 0.01
52 66 0.40
55 2 0.01
58 2 0.01
59 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (44 bp):
CAGTAGAGGTCATGTAGTTGCATATTCAGTAGGGGTCATGTAGC
Found at i:4150 original size:332 final size:331
Alignment explanation
Indices: 3201--7189 Score: 4670
Period size: 332 Copynumber: 12.1 Consensus size: 331
3191 CATGTAGAAA
* * * ** **
3201 TTAATTAGAAATTAATTTGGAAATTAGGAAAAACAATATTA-TAAGAATGAAAAGCCCTTTAAAT
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCC-TTAAAT
* * ** * * * *
3265 TTTTTTAGCGAAGAGTTAGATATTTTTT-T--GTGTTGTGGCCAAAAATTGAGAAAAAAATTTTC
64 TTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAG-GAAAATTTTTC
* * * * *
3327 GAGATAGTTTTTGCATAATTTTGGCTGAAATCGTGTATTTAACCATCACAGTTTTTTGGCTAAAA
128 GGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTA-CTAACCATCACTG-TTTTTGGCTAAAA
* * * ** * *
3392 ATGCG--TTCCT-AGGCCCCGGCACAGTTTTGGATGATTTTTTGCAGCAAGACTCCTTAAAATAT
191 ACGCGCATT-CTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATAT
* * * * ** *
3454 CTATTTTCATCTAACCAAATCTCAGACACAATGGATTTAAAGATAAGGTTTTAGGAGCATCTGAA
255 TTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAA
*
3519 TTATGTTTCAAT
320 TTATGTTTCGAT
* * ** * *
3531 TTAATTAGAATTTAATTCGGAAAATAGGAAAAACGATATTA-TAAGCATGAAAAGCCCTTGAATT
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCCTTAAATT
* * *
3595 TTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCG
65 TTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGG-AAAATTTTTCG
* *
3660 GGGTAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCATCACTGTTTTTGGCTAAAAACA
129 GGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACG
* * *
3722 CGCGTTCTGGGGCTCCGACTTAGTTTTGCATGATTTTTGGCAGCAAAACTCCTTAAAATATTTAT
194 CGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTAT
* * * *
3787 ATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATAATTTTATACGAGTATCTGAATTAT
259 ATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATTAT
*
3852 GTTTTGAT
324 GTTTCGAT
*
3860 TTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCGTTAAATT
1 TTAATTAGAAATTAATTC-GAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCCTTAAATT
* * * * *
3925 TTATTGGCGTTGAATTATATGTTTGTTATGAGTTTTTTGGCCAAAAATTGAGGAAAATTTTTCGG
65 TTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAATTTTTCGG
* * * * *
3990 GATAGTTTTTGCAAAATTTTGGCTGATATCGTGCACTAATCATCACTATTTTTGGCTAAAAACGC
130 GATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGC
* * **
4055 GCATTCTGGGGCCCCGACTTAGTTTTGCTTGATTTTTGACATTAAGACTCCTTAAAATATTTATA
195 GCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTATA
* * * * * * *
4120 TTCATTTAACCAAATCCCAGGCACAATGGATTTAAGAATAATATTTTACGAGCATCTAAATCATG
260 TTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATTATG
4185 TTTCGAT
325 TTTCGAT
* * * * *
4192 TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATAAGAAGCCTGAAAAGCCCTTAAATTT
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCCTTAAATTT
* **
4257 TATTGGCGTTGAGTTATATATTTTCTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCCA
66 TATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGG-AAAATTTTTCGG
* * * *
4322 GACAGTTTTTGCAAAATTTTGGCCGAAATCTTGTACTAACAATCA-TAGTTTTTGACTAAAAA--
130 GATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACT-GTTTTTGGCTAAAAACG
* ** ** ** * ** *
4384 TGCATTCCAGGGCCCCGACACAGTTTTGCATGATTTTTGGC-GCCAAGTGTCATTGTAATATCTA
194 CGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAG-CAAGACTCCTTAAAATATTTA
** * * * *
4448 TATTCATCTAACCATTTCTCGGCCACATTCGATTTAAGGAT-TTGTTTTTACGAGCATCTGAATT
258 TATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAAT-TTTTTACGAGCATCTGAATT
4512 ATGTTTCGAT
322 ATGTTTCGAT
** * * * ** *
4522 TTAATTAGAAATTAATTCGGAAAAAATTA-GAAAAACGAAAATT-GAAGCGTCTAAAGCCCTTCA
1 TTAATTAGAAATTAATTC-G-AAAAA-TAGGAAAAA-TTATATTAGTAGCCTGAAAAGCCCTTAA
* ** * * * **
4585 GTCTTT-TTGGATTTGAATTATATATTTTTTATTAGTGTTGTGGCCAAAAATTGATTAAAATTTT
62 AT-TTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAA-TTT
** *
4649 TTCGGGGCAGTTTTTGCAAAATTTTGGCCAAAATCGTGTACTAACCATCA-TAGTTTTTGGCT-A
125 TTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACT-GTTTTTGGCTAA
* * ** *
4712 AAACGCG--TTCCT-AGGCCCCAACACAGTTTTGGATGATTTTTGGCAGCAAGACTCCTTAAAAT
189 AAACGCGCATT-CTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAAT
* * * ** * **
4774 ATCTATTTTCATCTAACTAAATCTCATACACAATGGAATTAAGGATAAGGTTTTACGAGCATCTG
253 ATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTG
4839 AATTATGTTTCGAT
318 AATTATGTTTCGAT
* ** *
4853 ATAATTAGAAATTAATTC-AGAAAATAGGAAAAACGATATTA-TAAGCATGAAAAGCCCTTAAAT
1 TTAATTAGAAATTAATTCGA-AAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCCTTAAAT
* ** * * * *
4916 TTT-GTAACGATGAGTTATATATTTTTTATGAGTATTGTGGGCAAAAATTGGGGGAAAATTTTTA
64 TTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATT-GAGGAAAATTTTTC
*** * *
4980 GGGATAGTTTTAATAAAATTTTGGCCGAAATCGTGTATTAACCATCACTGTTTTTTGCTAAAAAC
128 GGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAAC
* * * * *
5045 GCGCGTTTTGCGGCCCCGACTTAGTTTTGCTTGATTTTTTTGCAGCAAGACTCCTTAAAATATTT
193 GCGCATTCTGGGGCCCCGACTTAGTTTTGCATGA-TTTTTGGCAGCAAGACTCCTTAAAATATTT
*
5110 AGATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATT
257 ATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATT
5175 ATGTTTCGAT
322 ATGTTTCGAT
* *
5185 TTAACTAGAAATTAATTCGAAAAATAGG-AAAATTCATATTAGAAGCCTGAAAAGCCCTTAAATT
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATT-ATATTAGTAGCCTGAAAAGCCCTTAAATT
* * * * *
5249 TTATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTTAGGAAATATTTTTCA
65 TTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAA-ATTTTTCG
* * * *
5314 GGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATGTTA-CATCACTGTTTTTTGCTAAAAAC
129 GGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTA-CTAACCATCACTGTTTTTGGCTAAAAAC
* * * *
5378 GCGCATTCTGGGG-CCCAACTTAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTCAAATATTTA
193 GCGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTA
* * * *
5442 TATTAATCTAACCAAATCCCAGCCACAATGAATTTAAGAATAA-TTTTTACGAGCATCTGAATTA
258 TATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATTA
*
5506 TATTTCGAT
323 TGTTTCGAT
* ** * *
5515 TTCATTA-AAATTAATTC-AAAAATAGGAAAAACGATATTA-TAAGCATGAAAAGCTCTTAAATA
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCCTTAAAT-
* **
5577 TTT-TTAGCAATGAGTTATATATTTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTT
64 TTTATTGGCGTTGAGTTATATA-TTTTTTATGAGTATTGTGGCCAAAAATTGAGG-AAAATTTTT
* * *
5641 CGGGATAGTTTTTGCAAAATTTTGGTCGAAATCGTGTACGTTAAACATCACTGTTTTTTTGCTAA
127 CGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC--TAACCATCACTG-TTTTTGGCTAA
* ** * *
5706 AAACACGTGTTCTAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTATAATA
189 AAACGCGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATA
* *
5771 TTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTATTTTTTACGAGCATCTTA
254 TTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGA
*
5836 ATCATGTTTCGAT
319 ATTATGTTTCGAT
* *
5849 TTAATTATAAATTAATTCGGAAAAATAGGAAAAATTATATTAGAAGCCTGAAAAGCCCTTAAATT
1 TTAATTAGAAATTAATTC-GAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCCTTAAATT
*
5914 TTATTGGCGTTAAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCG
65 TTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGG-AAAATTTTTCG
* *
5979 GGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCAATCACTGTTTTTTGTTAAAAAC
129 GGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACC-ATCACTGTTTTTGGCTAAAAAC
* *
6041 GCGCATTCTGGGCCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGGCTCCTTAAAATATTTA
193 GCGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTA
* * *
6106 TATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACAATCATCTTAATTA
258 TATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATTA
6171 TGTTTCGAT
323 TGTTTCGAT
* * *
6180 TTAATTATAAATTAATTCGAAAAATATGAAAAATTATATTAGAAGCCTGAAAAGCCCTTAAA-TT
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCCTTAAATTT
* * *
6244 TATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAATATTTTTCGG
66 TATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAA-ATTTTTCGG
* *
6309 G-TCAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCATCACTGTTTTTTGTTAAAAACG
130 GAT-AGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACG
* * * * *
6370 CGCATTCTGGGG-TCCGACTTAGTTTTGTATGATTTTTGACAGCAAGAATCCTTAAAATATTCAT
194 CGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTAT
* * * *
6434 ATTAATCTAACCAAATCTCAGCCAGAATGGATTTAAGAATATTTTTTTTACGAGCATCTGAATTA
259 ATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATA-ATTTTTTACGAGCATCTGAATTA
6499 TGTTTCGAT
323 TGTTTCGAT
* ** *
6508 TTAATTA-AAATTAATTCGGAAAATAGGAAAAACGATATTA-TAAGCATGAAAAGCCCTTAAATA
1 TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCCTTAAAT-
* * * * *
6571 TTT-TTTGCGATGAGTTATATA-TTCTTATGAGTATT-TTGCCAAAAACTGAGGAAAACTTTTTC
64 TTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAA-TTTTTC
* *
6633 GGGATAGTTTTTGCAAAATTTTGGACGAAATTGTGTACTAATAACCATCACTGTTTTTGGCTAAA
128 GGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---TAACCATCACTGTTTTTGGCTAAA
* * * * **
6698 AACGCGCGTTGTGGGGCCCTGACTTGGTTTTGCATGATTTTTGGCAGCTTGACTCCTTAAAATAT
190 AACGCGCATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATAT
* *
6763 TTATATTCATCTAACCAAATCTCAGCTACAATGTATTTAAGGATAATTTTTTACGAGCATCTGAA
255 TTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAA
*
6828 TTATGTTTTGAT
320 TTATGTTTCGAT
* * *
6840 TTTATTAGAAATTAATTCCTAAAAATAGGAAAAATTATATTA-TAAGCCTGAAAAGCCCTTAAGT
1 TTAATTAGAAATTAATT-CGAAAAATAGGAAAAATTATATTAGT-AGCCTGAAAAGCCCTTAAAT
* * *
6904 TTTATTGGCGTTGAGTTACATATTTTTAATGTGTATTGTGGCCAAAAATTGAGGAAAAACATTTT
64 TTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGG--AAA-ATTTT
* * * * * *
6969 T-GGGACAGTTTTTGCAAAATTTTGGCCTAAATTGTATACAAACTACTCACTGTTTTTGGCTAAA
126 TCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCA-TCACTGTTTTTGGCTAAA
* * * *
7033 AA--CACATTAC--GGGACCCGACTTAGTTTTGCATAATTTTTAGCAGCAAGACTCCTTAAAATA
190 AACGCGCATT-CTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATA
* * * **
7094 TCTATATTCATCTAACCTAATCTCAACCACAAATGGATTTAAGGATAAAGTTTTACGAGCAT-TC
254 TTTATATTCATCTAACCAAATCTCAGCCAC-AATGGATTTAAGGATAATTTTTTACGAGCATCT-
* *
7158 GAATTGTGTTTCAAT
317 GAATTATGTTTCGAT
7173 TTAATTAGAAATTAATT
1 TTAATTAGAAATTAATT
7190 TCGGAAATAA
Statistics
Matches: 3147, Mismatches: 424, Indels: 173
0.84 0.11 0.05
Matches are distributed among these distances:
325 1 0.00
326 57 0.02
327 161 0.05
328 243 0.08
329 428 0.14
330 344 0.11
331 481 0.15
332 750 0.24
333 355 0.11
334 94 0.03
335 41 0.01
336 97 0.03
337 86 0.03
338 8 0.00
339 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (331 bp):
TTAATTAGAAATTAATTCGAAAAATAGGAAAAATTATATTAGTAGCCTGAAAAGCCCTTAAATTT
TATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAATTTTTCGGG
ATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAACGCG
CATTCTGGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTATAT
TCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAATTATGT
TTCGAT
Found at i:4742 original size:661 final size:662
Alignment explanation
Indices: 3201--7216 Score: 4681
Period size: 661 Copynumber: 6.1 Consensus size: 662
3191 CATGTAGAAA
* * * **
3201 TTAATTAGAAATTAATTTGG-AAATTAGGAAAAAC-AATATTATAAGAATGAAAAGCCCTTTAAA
1 TTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAATATTAGAAGCCTGAAAAGCCC-TTAAA
* * * ** * * * * *
3264 TTTTTTTAGCGAAGAGTTAGATATTTTTT-T--GTGTTGTGGCCAAAAATTGAGAAAAAAATTTT
65 TTTTATTGGAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTT
* * * * *
3326 CGAGATAGTTTTTGCATAATTTTGGCTGAAATCGTGTATTTAACCATCACAGTTTTTTGGCTAAA
130 CGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTA-CTAACCATCACTG-TTTTTGGCTAAA
* * * ** * * *
3391 AATGCG-TTCCTAGGCCCCGGCACAGTTTTGGATGATTTTTTGCAGCAAGACTCCTTAAAATATC
193 AACGCGATT-CTGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATT
* * *
3455 TATTTTCATCTAACCAAATCTCAGACACAATGGATTTAA-AGATAAGGTTTTAGGAGCATCTGAA
257 TATATTCATCTAACCAAATCTCAGACACAATGGATTTAAGA-ATAATGTTTTACGAGCATCTGAA
* * *
3519 TTATGTTTCAATTTAATTAGAATTTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAA
321 TTATGTTTCGATTTAATTAGAAATTAATTCGAAAAATAGGAAAAACGATATTATAAGCATGAAAA
* *
3584 GCCCTTGAATTTTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA
386 GCCCTTAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGA
** *
3649 AAAATTTTTCGGGGTAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCATCACTGTTTTT
451 AAAATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACAATCACTGTTTTT
* * ** * *
3711 GGCTAAAAACACGCGTTCTGGGGCTCCGACTTAGTTTTGCATGATTTTTGGCAGCAAAACTCCTT
516 TGCT-AAAA-ACGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTT
* * * *
3776 AAAATATTTATATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATAATTTTATACGAGT
579 AAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGC
*
3841 ATCTGAATTATGTTTTGAT
644 ATCTGAATTATGTTTCGAT
* ** * *
3860 TTAATTAGAAATTAATTCAGAAAAATAGGAAAAA-TTATATTAGTAGCCTGAAAAGCCGTTAAAT
1 TTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAATATTAGAAGCCTGAAAAGCCCTTAAAT
* * * * *
3924 TTTATTGGCGTTGAATTATATGTTTGTTATGAGTTTTTTGGCCAAAAATTGAGG-AAAATTTTTC
66 TTTATTGGAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTC
* * * * *
3988 GGGATAGTTTTTGCAAAATTTTGGCTGATATCGTGCACTAATCATCACTATTTTTGGCTAAAAAC
131 GGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAAC
* * **
4053 GCGCATTCTGGGGCCCCGACTTAGTTTTGCTTGATTTTTGACATTAAGACTCCTTAAAATATTTA
196 GCG-ATTCT-GGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTA
* * * * * *
4118 TATTCATTTAACCAAATCCCAGGCACAATGGATTTAAGAATAATATTTTACGAGCATCTAAATCA
259 TATTCATCTAACCAAATCTCAGACACAATGGATTTAAGAATAATGTTTTACGAGCATCTGAATTA
* * * * *
4183 TGTTTCGATTTAATTAGAAATTAATTCGGAAAATAGG-AAAACTAATATAAGAAGCCTGAAAAGC
324 TGTTTCGATTTAATTAGAAATTAATTCGAAAAATAGGAAAAAC-GATATTATAAGCATGAAAAGC
* * *
4247 CCTTAAATTTTATTGGCGTTGAGTTATATATTTTCTATGAGTATTGTGGCCAAAAATTGAGGAAA
388 CCTTAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAA
** *
4312 AATTTTTCCAGACAGTTTTTGCAAAATTTTGGCCGAAATCTTGTACTAACAATCA-TAG-TTTTT
453 AATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACAATCACT-GTTTTTT
* ** ** * *
4375 GACTAAAAATGCATTCCAGGGCCCCGACACAGTTTTGCATGATTTTTGGC-GCCAAGTGTCATTG
517 G-CTAAAAACGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAG-CAAGACTCCTTA
* * ** * * * *
4439 TAATATCTATATTCATCTAACCATTTCTCGGCCACATTCGATTTAAGGAT-TTGTTTTTACGAGC
580 AAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAAT-TTTTTACGAGC
4503 ATCTGAATTATGTTTCGAT
644 ATCTGAATTATGTTTCGAT
* * ** *
4522 TTAATTAGAAATTAATTCGGAAAAAATTA-GAAAAACGAAAATT-GAAGCGTCTAAAGCCCTTCA
1 TTAATTAGAAATTAATTCGG-AAAAA-TAGGAAAAACGAATATTAGAAGCCTGAAAAGCCCTTAA
* * * * ** *
4585 GTCTTT-TTGGATTTGAATTATATATTTTTTATTAGTGTTGTGGCCAAAAATTGATTAAAATTTT
64 AT-TTTATTGGAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTT
** *
4649 TTCGGGGCAGTTTTTGCAAAATTTTGGCCAAAATCGTGTACTAACCATCA-TAGTTTTTGGCT-A
128 TTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACT-GTTTTTGGCTAA
* * ** *
4712 AAACGCG-TTCCTAGGCCCCAACACAGTTTTGGATGATTTTTGGCAGCAAGACTCCTTAAAATAT
192 AAACGCGATT-CTGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATAT
* * * * * * *
4776 CTATTTTCATCTAACTAAATCTCATACACAATGGAATTAAGGATAAGGTTTTACGAGCATCTGAA
256 TTATATTCATCTAACCAAATCTCAGACACAATGGATTTAAGAATAATGTTTTACGAGCATCTGAA
*
4841 TTATGTTTCGATATAATTAGAAATTAATTC-AGAAAATAGGAAAAACGATATTATAAGCATGAAA
321 TTATGTTTCGATTTAATTAGAAATTAATTCGA-AAAATAGGAAAAACGATATTATAAGCATGAAA
* * * *
4905 AGCCCTTAAATTTT-GTAACGATGAGTTATATATTTTTTATGAGTATTGTGGGCAAAAATTGGGG
385 AGCCCTTAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGG
* * * *** * *
4969 GAAAATTTTTAGGGATAGTTTTAATAAAATTTTGGCCGAAATCGTGTATTAACCATCACTGTTTT
450 AAAAATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACAATCACTGTTTT
* ** * *
5034 TTGCTAAAAACGCGCGTT-TTGCGGCCCCGACTTAGTTTTGCTTGATTTTTTTGCAGCAAGACTC
515 TTGCTAAAAA--CGCATTCCAG-GGCCCCGACTTAGTTTTGCATGA-TTTTTGGCAGCAAGACTC
*
5098 CTTAAAATATTTAGATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACG
576 CTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACG
5163 AGCATCTGAATTATGTTTCGAT
641 AGCATCTGAATTATGTTTCGAT
* *
5185 TTAACTAGAAATTAATTC-GAAAAATAGGAAAATTC--ATATTAGAAGCCTGAAAAGCCCTTAAA
1 TTAATTAGAAATTAATTCGGAAAAATAGGAAAA-ACGAATATTAGAAGCCTGAAAAGCCCTTAAA
* * * *
5247 TTTTATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTTAGGAAATATTTTT
65 TTTTATTGGAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTT
* * * * *
5312 CAGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATGTTA-CATCACTGTTTTTTGCTAAAA
130 CGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTA-CTAACCATCACTGTTTTTGGCTAAAA
* * * * *
5376 ACGCGCATTCTGGGGCCCAACTTAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTCAAATATTT
194 ACGCG-ATTCTGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTT
* * * *
5441 ATATTAATCTAACCAAATCCCAGCCACAATGAATTTAAGAATAAT-TTTTACGAGCATCTGAATT
258 ATATTCATCTAACCAAATCTCAGACACAATGGATTTAAGAATAATGTTTTACGAGCATCTGAATT
* *
5505 ATATTTCGATTTCATTA-AAATTAATTC-AAAAATAGGAAAAACGATATTATAAGCATGAAAAGC
323 ATGTTTCGATTTAATTAGAAATTAATTCGAAAAATAGGAAAAACGATATTATAAGCATGAAAAGC
* *
5568 TCTTAAATATTT-TTAGCAATGAGTTATATATTTTTTTATGAGTATTGTGGCCAAAAATTGAGGA
388 CCTTAAAT-TTTATTAGCGATGAGTTATATA-TTTTTTATGAGTATTGTGGCCAAAAATTGAGGA
* *
5632 AAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGTCGAAATCGTGTACGTTAA-ACATCACTGTT
451 AAAATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC--TAACA-ATCACTG-T
** *
5696 TTTTTGCTAAAAACACGTGTTCTAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACT
512 TTTTTGCT-AAAA-ACGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACT
* *
5761 CCTTATAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTATTTTTTAC
575 CCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTAC
* *
5826 GAGCATCTTAATCATGTTTCGAT
640 GAGCATCTGAATTATGTTTCGAT
* **
5849 TTAATTATAAATTAATTCGGAAAAATAGGAAAAA-TTATATTAGAAGCCTGAAAAGCCCTTAAAT
1 TTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAATATTAGAAGCCTGAAAAGCCCTTAAAT
*
5913 TTTATTGGCGTT-AAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTT
66 TTTATTGGAGTTGAA-TTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTT
* *
5977 CGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCAATCACTGTTTTTTGTTAAAA
130 CGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACC-ATCACTGTTTTTGGCTAAAA
*
6039 ACGCGCATTCTGGGCCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGGCTCCTTAAAATATT
194 ACGCG-ATTCTGGG-CCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATT
* * * * * *
6104 TATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACAATCATCTTAAT
257 TATATTCATCTAACCAAATCTCAGACACAATGGATTTAAGAATAATGTTTTACGAGCATCTGAAT
* * ** * *
6169 TATGTTTCGATTTAATTATAAATTAATTCGAAAAATATGAAAAATTATATTAGAAGCCTGAAAAG
322 TATGTTTCGATTTAATTAGAAATTAATTCGAAAAATAGGAAAAACGATATTATAAGCATGAAAAG
* * * * *
6234 CCCTTAAA-TTTATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAA
387 CCCTTAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAA
* * *
6298 ATATTTTTCGGGTCAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCATCACTGTTTTTT
452 AAATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACAATCACTGTTTTTT
* * ** * * *
6360 GTTAAAAACGCGCATT-CTGGGGTCCGACTTAGTTTTGTATGATTTTTGACAGCAAGAATCCTTA
517 GCTAAAAA--CGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTA
* * * * *
6424 AAATATTCATATTAATCTAACCAAATCTCAGCCAGAATGGATTTAAGAATATTTTTTTTACGAGC
580 AAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATA-ATTTTTTACGAGC
6489 ATCTGAATTATGTTTCGAT
644 ATCTGAATTATGTTTCGAT
* *
6508 TTAATTA-AAATTAATTCGG-AAAATAGGAAAAACG-ATATTATAAGCATGAAAAGCCCTTAAAT
1 TTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAATATTAGAAGCCTGAAAAGCCCTTAAAT
* * * * * *
6570 ATTTTTTGCGA--TGAGTTATATA-TTCTTATGAGTATT-TTGCCAAAAACTGAGGAAAACTTTT
66 -TTTATTG-GAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTT
* *
6631 TCGGGATAGTTTTTGCAAAATTTTGGACGAAATTGTGTACTAATAACCATCACTGTTTTTGGCTA
129 TCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---TAACCATCACTGTTTTTGGCTA
* * * * **
6696 AAAACGCGCGTTGTGGGGCCCTGACTTGGTTTTGCATGATTTTTGGCAGCTTGACTCCTTAAAAT
191 AAAACGCG-ATTCT-GGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAAT
* * *
6761 ATTTATATTCATCTAACCAAATCTCAG-CTACAATGTATTTAAGGATAATTTTTTACGAGCATCT
254 ATTTATATTCATCTAACCAAATCTCAGAC-ACAATGGATTTAAGAATAATGTTTTACGAGCATCT
* * * ** *
6825 GAATTATGTTTTGATTTTATTAGAAATTAATTCCTAAAAATAGGAAAAATTATATTATAAGCCTG
318 GAATTATGTTTCGATTTAATTAGAAATTAATT-CGAAAAATAGGAAAAACGATATTATAAGCATG
* * * * * *
6890 AAAAGCCCTTAAGTTTTATTGGCGTTGAGTTACATATTTTTAATGTGTATTGTGGCCAAAAATTG
382 AAAAGCCCTTAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTG
* * * * *
6955 AGGAAAAACATTTTT-GGGACAGTTTTTGCAAAATTTTGGCCTAAATTGTATACAAACTACTCAC
447 AGG-AAAA-ATTTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAAC-AATCAC
* * * * * *
7019 TGTTTTTGGCTAAAAACACATTAC-GGGACCCGACTTAGTTTTGCATAATTTTTAGCAGCAAGAC
509 TGTTTTTTGCTAAAAACGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGAC
* * * **
7083 TCCTTAAAATATCTATATTCATCTAACCTAATCTCAACCACAAATGGATTTAAGGATAAAGTTTT
574 TCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCAC-AATGGATTTAAGGATAATTTTTT
* *
7148 ACGAGCAT-TCGAATTGTGTTTCAAT
638 ACGAGCATCT-GAATTATGTTTCGAT
*
7173 TTAATTAGAAATTAATTTCGGAAATAAATTGGAAAAACG-ATATT
1 TTAATTAGAAATTAA-TTCGG-AA-AAATAGGAAAAACGAATATT
7217 TGAAAATGGT
Statistics
Matches: 2875, Mismatches: 387, Indels: 179
0.84 0.11 0.05
Matches are distributed among these distances:
655 60 0.02
656 13 0.00
657 48 0.02
658 109 0.04
659 111 0.04
660 358 0.12
661 668 0.23
662 347 0.12
663 343 0.12
664 299 0.10
665 386 0.13
666 53 0.02
667 61 0.02
669 1 0.00
670 18 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (662 bp):
TTAATTAGAAATTAATTCGGAAAAATAGGAAAAACGAATATTAGAAGCCTGAAAAGCCCTTAAAT
TTTATTGGAGTTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTC
GGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTTGGCTAAAAAC
GCGATTCTGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATTTATA
TTCATCTAACCAAATCTCAGACACAATGGATTTAAGAATAATGTTTTACGAGCATCTGAATTATG
TTTCGATTTAATTAGAAATTAATTCGAAAAATAGGAAAAACGATATTATAAGCATGAAAAGCCCT
TAAATTTTATTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAAT
TTTTCGGGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACAATCACTGTTTTTTGCTA
AAAACGCATTCCAGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATAT
TTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAA
TTATGTTTCGAT
Found at i:5125 original size:993 final size:993
Alignment explanation
Indices: 3201--7196 Score: 4973
Period size: 993 Copynumber: 4.0 Consensus size: 993
3191 CATGTAGAAA
* * * **
3201 TTAATTAGAAATTAATTTGGAAATTAGGAAAAAC-AATATTATAAGAATGAAAAGCCCTTTAAAT
1 TTAATTAGAAATTAATTCGGAAAATAGG-AAAACTAATATTAGAAGCCTGAAAAGCCC-TTAAAT
* * ** * * * * * *
3265 TTTTTTAGCGAAGAGTTAGATATTT-TT-T-TGTGTTGTGGCCAAAAATTGAGAAAAAAATTTTC
64 TTTATTGGCGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTC
* * * * * *
3327 GAGATAGTTTTTGCATAATTTTGGCTGAAATCGTGTATTTAACCATCACAGTTTTTTGGCTAAAA
129 CAGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATCTAACCATCACTGTTTTTT-GCTAAAA
* * * * * *
3392 A-TGCGTTCCTA-GGCCCCGGCACAGTTTTGGATGATTTTTTGCAGCAAGACTCCTTAAAATATC
193 ACCGCATT-C-AGGGCCCCGACACAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTAAAATATC
* * * * * * *
3455 TATTTTCATCTAACCAAATCTCAGACACAATGGATTTAAAGATAAGGTTTTAGGAGCATCTGAAT
256 TATATTAATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTAGTTTTTACGAGCATCTGAAT
* *
3520 TATGTTTCAATTTAATTAGAATTTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAG
321 TATGTTTCGATTTAATTA-AAATTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAG
*
3585 CCCTTGAATTTTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAA
385 CCCTTAAATTTTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAA
*
3650 AAATTTTTCGGGGTAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC----CCATCACTGTTTTT
450 AAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACATAACCATCACTGTTTTT
* * *
3711 GGCTAAAAACACGCGTTCTGGGGCTCCGACTTAGTTTTGCATGATTTTTGGCAGCAAAACTCCTT
515 GGCT-AAAA-ACGCGTTCTGAGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTT
* * * *
3776 AAAATATTTATATTCATCGAACCAAATCTCAGCCATAATGGATTTAAGGATAATTTTATACGAGT
578 AAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGC
*
3841 ATCTGAATTATGTTTTGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTAGT-A
643 ATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTA-TAA
* * * * * *
3905 GCCTGAAAAGCCGTTAAATTTTATTGGCGTTGAATTATATGTTTGTTATGAGTTTTTTGGCCAAA
707 GCCTGAAAAGCCCTTAAATTTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAA
* * * * *
3970 AATTGAGG-AAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCTGATATCGTGCACTAATCATC
772 AATTGGGGAAAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATC
* * **
4034 ACTATTTTTGGCTAAAAACGCGCATTCTGGGGCCCCGACTTAGTTTTGCTTGA-TTTTTGACATT
837 ACTGTTTTTGGCTAAAAACGCGCATTCT-GGGCCCCGACTTAGTTTTGCATGATTTTTTG-CAGC
* * * *
4098 AAGACTCCTTAAAATATTTATATTCATTTAACCAAATCCCAGGCACAATGGATTTAAGAATAATA
900 AAGACTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATA
* *
4163 TTTTACGAGCATCTAAATCATGTTTCGAT
965 TTTTACGAGCATCTGAATTATGTTTCGAT
*
4192 TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATAAGAAGCCTGAAAAGCCCTTAAATTT
1 TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATTAGAAGCCTGAAAAGCCCTTAAATTT
*
4257 TATTGGCGTTGAGTTATATATTT-TCTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCC
66 TATTGGCGTTGAATTATATATTTGT-TATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCC
* *
4321 AGACAGTTTTTGCAAAATTTTGGCCGAAATCTTGTA-CTAACAATCA-TAG-TTTTTGACTAAAA
130 AGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATCTAACCATCACT-GTTTTTTG-CTAAAA
* * * * **
4383 A-TGCATTCCAGGGCCCCGACACAGTTTTGCATGATTTTTGGC-GCCAAGTGTCATTGTAATATC
193 ACCGCATT-CAGGGCCCCGACACAGTTTTGTATGATTTTTGGCAG-CAAGAGTCCTTAAAATATC
* ** * * * *
4446 TATATTCATCTAACCATTTCTCGGCCACATTCGATTTAAGGATTTGTTTTTACGAGCATCTGAAT
256 TATATTAATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTAGTTTTTACGAGCATCTGAAT
* * * **
4511 TATGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATTA-GAAAAACGAAAATT-GAAGCGTCT
321 TATGTTTCGATTTAATTA-AAATTAATTCGG--AAAA-TAGGAAAAACG-ATATTATAAGCATGA
* * * * * *
4574 AAAGCCCTTCAGTCTTTTT-G-GATTTGAATTATATATTTTTTATTAGTGTTGTGGCCAAAAATT
381 AAAGCCCTTAAATTTTTTTAGCGA--TGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATT
** * ** *
4637 GATTAAAATTTTTTCGGGGCAGTTTTTGCAAAATTTTGGCCAAAATCGTGTAC-TAACCATCA-T
444 GAGGAAAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACATAACCATCACT
* ** *
4700 AGTTTTTGGCT-AAAACGCGTTCCT-AGGCCCCAACACAGTTTTGGATGATTTTTGGCAGCAAGA
509 -GTTTTTGGCTAAAAACGCGTT-CTGAGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGA
* * * ** * **
4763 CTCCTTAAAATATCTATTTTCATCTAACTAAATCTCATACACAATGGAATTAAGGATAAGGTTTT
572 CTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTT
* **
4828 ACGAGCATCTGAATTATGTTTCGATATAATTAGAAATTAATTCAG-AAAATAGGAAAAACGATAT
637 ACGAGCATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATAT
* * ** *
4892 TATAAGCATGAAAAGCCCTTAAATTTT-GTAACGATGAGTTATATATTTTTTATGAGTATTGTGG
702 TATAAGCCTGAAAAGCCCTTAAATTTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGG
* * * *** *
4956 GCAAAAATTGGGGGAAAATTTTTAGGGATAGTTTTAATAAAATTTTGGCCGAAATCGTGTATTAA
767 CCAAAAATTGGGGAAAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAA
* * * *
5021 CCATCACTGTTTTTTGCTAAAAACGCGCGTTTTGCGGCCCCGACTTAGTTTTGCTTGATTTTTTT
832 CCATCACTGTTTTTGGCTAAAAACGCGCATTCTG-GGCCCCGACTTAGTTTTGCATGA-TTTTTT
*
5086 GCAGCAAGACTCCTTAAAATATTTAGATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGA
895 GCAGCAAGACTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGA
*
5151 TAATTTTTTACGAGCATCTGAATTATGTTTCGAT
960 TAATATTTTACGAGCATCTGAATTATGTTTCGAT
* * * *
5185 TTAACTAGAAATTAATTCGAAAAATAGGAAAATTCATATTAGAAGCCTGAAAAGCCCTTAAATTT
1 TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATTAGAAGCCTGAAAAGCCCTTAAATTT
* * *
5250 TATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTTAGGAAATATTTTT-CA
66 TATTGGCGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCCA
* *
5314 GGACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATGTTA-CATCACTGTTTTTTGCTAAAAAC
131 -GACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATCTAACCATCACTGTTTTTTGCTAAAAAC
* * * ** * *
5378 GCGCATTCTGGGGCCCAACTTAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTCAAATATTTAT
195 -CGCATTCAGGGCCCCGACACAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTAAAATATCTAT
* * * *
5443 ATTAATCTAACCAAATCCCAGCCACAATGAATTTAA-GAATAATTTTTACGAGCATCTGAATTAT
259 ATTAATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTAGTTTTTACGAGCATCTGAATTAT
* * * *
5507 ATTTCGATTTCATTAAAATTAATTC-AAAAATAGGAAAAACGATATTATAAGCATGAAAAGCTCT
324 GTTTCGATTTAATTAAAATTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAGCCCT
* *
5571 TAAATATTTTTAGCAATGAGTTATATATTTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAA
389 TAAATTTTTTTAGCGATGAGTTATATA-TTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAA
* * * *
5636 TTTTTCGGGATAGTTTTTGCAAAATTTTGGTCGAAATCGTGTACGTTAAACATCACTGTTTTTTT
453 TTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC-ATAACCATCACTG-TTTTTG
*
5701 GCTAAAAACACGTGTTCT-AGGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTT
516 GCT-AAAA-ACGCGTTCTGA-GGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTT
* *
5765 ATAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTATTTTTTACGAGC
578 AAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGC
* * * * *
5830 ATCTTAATCATGTTTCGATTTAATTATAAATTAATTCGGAAAAATAGGAAAAATTATATTAGAAG
643 ATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTATAAG
*
5895 CCTGAAAAGCCCTTAAATTTTATTGGCGTTAAGTTATATATTTTTTATGAGTATTGTGGCCAAAA
708 CCTGAAAAGCCCTTAAATTTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAA
*
5960 ATTGAGGAAAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC---CCAATC
773 ATTGGGGAAAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACC-ATC
* * *
6022 ACTGTTTTTTGTTAAAAACGCGCATTCTGGGCCCCCGACTTAGTTTTGCATGATTTTTGGCAGCA
837 ACTGTTTTTGGCTAAAAACGCGCATTCTGGG-CCCCGACTTAGTTTTGCATGATTTTTTGCAGCA
* *
6087 AGGCTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTT
901 AGACTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATAT
* * *
6152 TTTACAATCATCTTAATTATGTTTCGAT
966 TTTACGAGCATCTGAATTATGTTTCGAT
* * * * *
6180 TTAATTATAAATTAATTCGAAAAATATGAAAAATTATATTAGAAGCCTGAAAAGCCCTTAAA-TT
1 TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATTAGAAGCCTGAAAAGCCCTTAAATTT
* * **
6244 TATTGGTGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAATATTTTTCGG
66 TATTGGCGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCCA
* *
6309 GTCAGTTTTTGCAAAATTTTGGCCGAAATCGTGTA-C---CCATCACTGTTTTTTGTTAAAAACG
131 GACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATCTAACCATCACTGTTTTTTGCTAAAAAC-
* ** ** * *
6370 CGCATTCTGGGGTCCGACTTAGTTTTGTATGATTTTTGACAGCAAGAATCCTTAAAATAT-TCAT
195 CGCATTCAGGGCCCCGACACAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTAAAATATCT-AT
* * **
6434 ATTAATCTAACCAAATCTCAGCCAGAATGGATTTAAGAATATTTTTTTTACGAGCATCTGAATTA
259 ATTAATCTAACCAAATCTCAGCCACAATGGATTTAAGGAT-TAGTTTTTACGAGCATCTGAATTA
6499 TGTTTCGATTTAATTAAAATTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAGCCC
323 TGTTTCGATTTAATTAAAATTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAGCCC
* * *
6564 TTAAATATTTTTT-GCGATGAGTTATATA-TTCTTATGAGTATT-TTGCCAAAAACTGAGGAAAA
388 TTAAAT-TTTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAA
* * *
6626 CTTTTTCGGGATAGTTTTTGCAAAATTTTGGACGAAATTGTGTACTAATAACCATCACTGTTTTT
452 ATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTAC--ATAACCATCACTGTTTTT
* * * * **
6691 GGCTAAAAACGCGCGTTGTGGGGCCCTGACTTGGTTTTGCATGATTTTTGGCAGCTTGACTCCTT
515 GGCTAAAAA--CGCGTTCTGAGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTT
* *
6756 AAAATATTTATATTCATCTAACCAAATCTCAGCTACAATGTATTTAAGGATAATTTTTTACGAGC
578 AAAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGC
* * **
6821 ATCTGAATTATGTTTTGATTTTATTAGAAATTAATTCCTAAAAATAGGAAAAATTATATTATAAG
643 ATCTGAATTATGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTATAAG
* * * *
6886 CCTGAAAAGCCCTTAAGTTTTATTGGCGTTGAGTTACATATTTTTAATGTGTATTGTGGCCAAAA
708 CCTGAAAAGCCCTTAAATTTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAA
* * * * * * *
6951 ATTGAGGAAAAACATTTTT-GGGACAGTTTTTGCAAAATTTTGGCCTAAATTGTATACAAACTAC
773 ATTG-GGGAAAA-ATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCA-
* * * *
7015 TCACTGTTTTTGGCTAAAAA--CACATTAC-GGGACCCGACTTAGTTTTGCATAATTTTTAGCAG
835 TCACTGTTTTTGGCTAAAAACGCGCATT-CTGGGCCCCGACTTAGTTTTGCATGATTTTTTGCAG
* * *
7077 CAAGACTCCTTAAAATATCTATATTCATCTAACCTAATCTCAACCACAAATGGATTTAAGGATAA
899 CAAGACTCCTTAAAATATTTATATTCATCTAACCAAATCTCAGCCAC-AATGGATTTAAGGATAA
* *
7142 -AGTTTTACGAGCAT-TCGAATTGTGTTTCAAT
963 TA-TTTTACGAGCATCT-GAATTATGTTTCGAT
7173 TTAATTAGAAATTAATTTCGGAAA
1 TTAATTAGAAATTAA-TTCGGAAA
7197 TAAATTGGAA
Statistics
Matches: 2617, Mismatches: 317, Indels: 139
0.85 0.10 0.05
Matches are distributed among these distances:
988 6 0.00
989 43 0.02
990 113 0.04
991 642 0.25
992 302 0.12
993 724 0.28
994 262 0.10
995 197 0.08
996 200 0.08
997 42 0.02
998 86 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (993 bp):
TTAATTAGAAATTAATTCGGAAAATAGGAAAACTAATATTAGAAGCCTGAAAAGCCCTTAAATTT
TATTGGCGTTGAATTATATATTTGTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTTTTCCA
GACAGTTTTTGCAAAATTTTGGCCGAAATCGTGTATCTAACCATCACTGTTTTTTGCTAAAAACC
GCATTCAGGGCCCCGACACAGTTTTGTATGATTTTTGGCAGCAAGAGTCCTTAAAATATCTATAT
TAATCTAACCAAATCTCAGCCACAATGGATTTAAGGATTAGTTTTTACGAGCATCTGAATTATGT
TTCGATTTAATTAAAATTAATTCGGAAAATAGGAAAAACGATATTATAAGCATGAAAAGCCCTTA
AATTTTTTTAGCGATGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATTT
TTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACATAACCATCACTGTTTTTGGCTAA
AAACGCGTTCTGAGGCCCCGACTTAGTTTTGCATGATTTTTGGCAGCAAGACTCCTTAAAATATT
TATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATTTTTTACGAGCATCTGAAT
TATGTTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAATTATATTATAAGCCTGAAAA
GCCCTTAAATTTTATTGGCGTTGAGTTATATATTTTTTATGAGTATTGTGGCCAAAAATTGGGGA
AAAATTTTTCGGGATAGTTTTTGCAAAATTTTGGCCGAAATCGTGTACTAACCATCACTGTTTTT
GGCTAAAAACGCGCATTCTGGGCCCCGACTTAGTTTTGCATGATTTTTTGCAGCAAGACTCCTTA
AAATATTTATATTCATCTAACCAAATCTCAGCCACAATGGATTTAAGGATAATATTTTACGAGCA
TCTGAATTATGTTTCGAT
Found at i:9598 original size:20 final size:20
Alignment explanation
Indices: 9573--9612 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
9563 ATTGAGCTAT
9573 ATCATATGTAATGCAGAAAA
1 ATCATATGTAATGCAGAAAA
*
9593 ATCATATGTAATGTAGAAAA
1 ATCATATGTAATGCAGAAAA
9613 GGAGTCTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.28
Consensus pattern (20 bp):
ATCATATGTAATGCAGAAAA
Found at i:10340 original size:39 final size:39
Alignment explanation
Indices: 10286--10363 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
10276 CTTAACAAGG
* *
10286 CAGACACGATGGTACACGAGATAACACATGAAGACACGA
1 CAGACACGAAGGTACACGAGATAACACAGGAAGACACGA
* *
10325 CAGACACGAAGGTACACGAGATGACAGAGGAAGACACGA
1 CAGACACGAAGGTACACGAGATAACACAGGAAGACACGA
10364 AGGTACACGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.44, C:0.22, G:0.27, T:0.08
Consensus pattern (39 bp):
CAGACACGAAGGTACACGAGATAACACAGGAAGACACGA
Found at i:10362 original size:30 final size:30
Alignment explanation
Indices: 10326--10387 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
10316 AAGACACGAC
*
10326 AGACACGAAGGTACACGAGATGACAGAGGA
1 AGACACGAAGGTACACGAGAAGACAGAGGA
10356 AGACACGAAGGTACACGAGAAGACAGAGGA
1 AGACACGAAGGTACACGAGAAGACAGAGGA
10386 AG
1 AG
10388 GAAGAGGCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.34, T:0.05
Consensus pattern (30 bp):
AGACACGAAGGTACACGAGAAGACAGAGGA
Found at i:10433 original size:62 final size:62
Alignment explanation
Indices: 10359--10692 Score: 650
Period size: 62 Copynumber: 5.4 Consensus size: 62
10349 CAGAGGAAGA
10359 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
10421 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
10483 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
*
10545 CACGAAGGTACACGAGAAGACAAAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
*
10607 CACGAAGGTACACGAGAAGACGGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
10669 CACGAAGGTACACGAGAAGACAGA
1 CACGAAGGTACACGAGAAGACAGA
10693 CACGAAGGTA
Statistics
Matches: 268, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 268 1.00
ACGTcount: A:0.35, C:0.22, G:0.40, T:0.03
Consensus pattern (62 bp):
CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
Found at i:10696 original size:24 final size:24
Alignment explanation
Indices: 10669--10714 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
10659 GGCCAGCAGG
10669 CACGAAGGTACACGAGAAGACAGA
1 CACGAAGGTACACGAGAAGACAGA
10693 CACGAAGGTACACGAGAAGACA
1 CACGAAGGTACACGAGAAGACA
10715 CAGTGGTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.22, G:0.28, T:0.04
Consensus pattern (24 bp):
CACGAAGGTACACGAGAAGACAGA
Found at i:11616 original size:45 final size:45
Alignment explanation
Indices: 11567--11666 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
11557 AGATCGAGAA
* * *
11567 AGCTTAGGCTCCATGATTGCCGAATACTTGAAGGAGACCAAAGAG
1 AGCTTTGGCTCCAAGATTGCCAAATACTTGAAGGAGACCAAAGAG
* * * *
11612 AGCTTTGGCTCCAAGATTGCCAAATGCTTTAAGGAGATCAACGAG
1 AGCTTTGGCTCCAAGATTGCCAAATACTTGAAGGAGACCAAAGAG
11657 AGCTTTGGCT
1 AGCTTTGGCT
11667 GACTCCATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (45 bp):
AGCTTTGGCTCCAAGATTGCCAAATACTTGAAGGAGACCAAAGAG
Found at i:40026 original size:30 final size:31
Alignment explanation
Indices: 39990--40055 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
39980 TTATATAAAT
*
39990 GAAAATTACAGTATTTTTATTT-TAAAAAAA
1 GAAAATTACAGTATTTTTATTTAAAAAAAAA
*
40020 GAAAATTACAGTATTTTTCTTTAAAAAAAAA
1 GAAAATTACAGTATTTTTATTTAAAAAAAAA
40051 GAAAA
1 GAAAA
40056 AGATTATAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 21 0.64
31 12 0.36
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.35
Consensus pattern (31 bp):
GAAAATTACAGTATTTTTATTTAAAAAAAAA
Found at i:55181 original size:21 final size:19
Alignment explanation
Indices: 55156--55211 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
55146 ACTGCTCTAA
55156 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* * *
55177 TAATCTAATCTGTATAGTG
1 TAATCTCATCTGTACAGTC
55196 TAATCTCATCTGTACA
1 TAATCTCATCTGTACA
55212 ATTACCAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 14 0.47
21 16 0.53
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:61253 original size:31 final size:31
Alignment explanation
Indices: 61217--61291 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
61207 TTTAATTTGG
* *
61217 TCAAATAAGGGCCTAATATTATTGAAAATGC
1 TCAAATAAAGGCCTAACATTATTGAAAATGC
*
61248 TCAAATAAAGGTCTAACATTATTGAAAATGC
1 TCAAATAAAGGCCTAACATTATTGAAAATGC
61279 TCAAATAAAGGCC
1 TCAAATAAAGGCC
61292 CACCCTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (31 bp):
TCAAATAAAGGCCTAACATTATTGAAAATGC
Found at i:61315 original size:91 final size:91
Alignment explanation
Indices: 61167--61346 Score: 227
Period size: 91 Copynumber: 2.0 Consensus size: 91
61157 TCGAATAAGA
* * * * * **
61167 GTCTAACATTTGTCAAAATGCTCAAGTAAGGGTCCAATCTTTTAATTTGGTCAAATAAGGGCCTA
1 GTCTAACATTTGTCAAAATGCTCAAATAAAGGCCCAACCTTTTAATTTGGCCAAATAAGGAACTA
* * *
61232 ATATTATTGAAAATGCTCAAATAAAG
66 ACATTATCGAAAATACTCAAATAAAG
* *
61258 GTCTAACATTAT-TGAAAATGCTCAAATAAAGGCCCACCCTTTTAATTTGGCCAAATAAGGAACT
1 GTCTAACATT-TGTCAAAATGCTCAAATAAAGGCCCAACCTTTTAATTTGGCCAAATAAGGAACT
*
61322 GACATTATCGAAAATACTCAAATAA
65 AACATTATCGAAAATACTCAAATAA
61347 GGACCTGAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
91 74 0.99
92 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (91 bp):
GTCTAACATTTGTCAAAATGCTCAAATAAAGGCCCAACCTTTTAATTTGGCCAAATAAGGAACTA
ACATTATCGAAAATACTCAAATAAAG
Found at i:77719 original size:18 final size:16
Alignment explanation
Indices: 77676--77710 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
77666 AAAAAAGGTA
77676 TTTATATTCTAATTTT
1 TTTATATTCTAATTTT
77692 TTTATATTCTAATTTT
1 TTTATATTCTAATTTT
77708 TTT
1 TTT
77711 TTATATTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATATTCTAATTTT
Done.