Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023857.1 Corchorus olitorius cultivar O-4 contig23890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6393
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:6130 original size:30 final size:30

Alignment explanation


    Indices: 6058--6132  Score: 89
    Period size: 30  Copynumber: 2.5  Consensus size: 30

       6048 TTATAATTAG

                                         **
       6058 TATAGATAATTATTAAACTTATTATTAGTGG
          1 TATA-ATAATTATTAAACTTATTATTAGTAA

               *                          
       6089 TATTATAATTATTAAACTTATTATTA-TAA
          1 TATAATAATTATTAAACTTATTATTAGTAA

                   *       
       6118 TAATAATTATTATTA
          1 T-ATAATAATTATTA

       6133 GTGGTATGTA


Statistics
Matches: 38,  Mismatches: 5, Indels: 3
        0.83            0.11        0.07

Matches are distributed among these distances:
  29    2  0.05
  30   33  0.87
  31    3  0.08

ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49


Consensus pattern (30 bp):   
TATAATAATTATTAAACTTATTATTAGTAA
Done.