Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023859.1 Corchorus olitorius cultivar O-4 contig23892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117337

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3937--3978
21
2.0
21
100
0
84
38
14
0
47
1.44
4309--4349
14
3.1
14
75
13
50
7
24
0
68
1.15
6209--6245
19
1.9
19
88
0
56
21
32
8
37
1.83
12940--12988
23
2.1
24
84
3
64
75
4
12
8
1.16
12940--12992
28
1.9
27
84
3
70
77
3
11
7
1.10
14291--14320
2
15.0
2
92
0
51
50
0
46
3
1.18
16573--16598
2
13.0
2
100
0
52
50
0
0
50
1.00
27301--27343
19
2.3
19
92
4
70
32
27
20
18
1.96
52990--53015
4
6.5
4
100
0
52
76
0
0
23
0.78
68332--68387
29
1.9
29
85
0
76
44
0
19
35
1.51
77667--77701
15
2.5
14
90
9
54
0
37
0
62
0.95
108475--108503
15
1.9
15
100
0
58
24
0
0
75
0.80
108481--108505
12
2.1
12
100
0
50
24
0
0
76
0.80
109622--109655
17
2.0
17
88
0
50
0
17
0
82
0.67
109670--109930
106
2.5
103
86
5
346
40
8
9
41
1.67
113099--113162
18
2.9
24
69
26
77
57
9
9
23
1.59
114622--114709
43
2.0
43
93
0
149
35
4
10
50
1.57
114810--114871
22
2.7
22
72
18
56
33
8
14
43
1.75
115997--117250
319
3.9
320
79
8
1305
35
16
15
32
1.91
116019--117318
649
2.0
656
86
4
1822
35
16
15
32
1.90

Tables:   1

The End!