Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023862.1 Corchorus olitorius cultivar O-4 contig23895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12245

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--851
321
2.6
314
75
9
799
35
15
15
32
1.90
1578--1685
13
7.8
13
84
11
126
16
0
38
44
1.48
1567--1685
21
5.7
20
78
17
118
16
0
39
42
1.54
1575--1677
8
14.6
7
80
15
115
15
0
40
43
1.47
1578--1685
29
3.9
28
84
8
141
16
0
38
44
1.48
1693--3129
322
4.5
318
78
8
1451
36
16
15
31
1.91
3250--3365
7
16.9
7
81
13
134
17
0
40
42
1.49
3840--7120
323
10.1
322
79
6
3425
36
16
15
32
1.90
3472--7120
651
5.6
649
86
4
4308
36
16
15
32
1.89
3366--7120
318
11.6
319
78
7
3674
36
16
14
32
1.89
7648--7672
4
6.2
4
100
0
50
76
0
24
0
0.80
8670--8705
14
2.4
15
90
9
56
41
13
0
44
1.44

Tables:   1

The End!