Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023864.1 Corchorus olitorius cultivar O-4 contig23897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10458
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32


Found at i:10372 original size:21 final size:21

Alignment explanation


    Indices: 10348--10396  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

      10338 AGATAATGTC

                                 
      10348 CGTAGCAAATGTAAATAAGCT
          1 CGTAGCAAATGTAAATAAGCT

                    *            
      10369 CGTAGCAACTGTAAATAAGCT
          1 CGTAGCAAATGTAAATAAGCT

                   
      10390 CGTAGCA
          1 CGTAGCA

      10397 TATAAGAATA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22


Consensus pattern (21 bp):   
CGTAGCAAATGTAAATAAGCT

Done.