Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023868.1 Corchorus olitorius cultivar O-4 contig23901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138562

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--6005
331
18.2
331
79
5
6056
37
15
14
32
1.88
1--6005
663
9.1
658
83
6
6149
37
15
14
32
1.88
8234--8292
16
3.7
16
72
17
50
69
18
10
1
1.25
17681--17765
40
2.2
40
93
2
145
31
10
15
42
1.81
26364--26434
34
2.1
34
100
0
142
50
18
11
19
1.76
31194--31227
17
2.1
16
88
5
50
73
5
0
20
1.04
32107--32287
99
1.8
99
84
4
249
33
13
9
43
1.76
32312--32446
70
1.9
69
88
4
200
32
12
9
45
1.75
34710--34751
2
22.0
2
90
9
70
50
0
0
50
1.00
45351--45375
13
1.9
13
100
0
50
72
0
28
0
0.86
49645--49694
8
6.4
8
84
11
59
86
0
14
0
0.58
49645--49694
15
3.2
16
83
11
68
86
0
14
0
0.58
49663--49692
4
7.8
4
92
7
53
80
0
20
0
0.72
57303--57399
47
2.1
47
98
0
185
41
12
15
30
1.84
67740--67789
22
2.4
22
80
16
61
28
14
4
54
1.58
69555--69662
48
2.2
48
96
0
198
23
13
8
54
1.66
79682--79722
18
2.3
18
86
0
55
46
31
7
14
1.72
90680--90713
2
17.0
2
100
0
68
50
0
0
50
1.00
97670--97696
14
1.9
14
100
0
54
25
0
0
74
0.83
100767--100803
19
1.9
19
94
0
65
16
29
24
29
1.96
101285--101313
11
2.5
12
88
11
51
72
0
6
20
1.07
107606--107640
15
2.3
15
90
0
52
8
11
2
77
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116929--116978
24
2.1
24
100
0
100
30
20
22
28
1.98
119884--119938
26
2.2
25
80
9
58
29
12
12
45
1.79
119894--119943
26
2.0
25
92
7
84
26
12
12
50
1.74
120202--120412
31
6.9
31
83
3
205
36
25
21
16
1.94
120202--120390
62
3.1
61
83
3
227
36
25
21
16
1.94
125015--125129
19
5.8
19
68
17
74
33
11
22
32
1.90
124991--125112
59
2.1
59
93
0
208
31
11
22
33
1.90
125078--125129
21
2.6
19
81
6
68
34
9
23
32
1.87
127817--127858
12
3.8
12
75
18
54
21
35
9
33
1.86
127817--127866
21
2.4
21
93
0
91
22
36
10
32
1.87
130617--130656
20
2.0
20
100
0
80
25
20
10
45
1.81
132129--132157
15
1.9
15
100
0
58
75
0
3
20
0.94

Tables:   1

The End!