Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023870.1 Corchorus olitorius cultivar O-4 contig23903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61320

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
875--3706
321
8.9
321
78
7
2855
35
17
14
32
1.90
2795--5687
322
9.1
320
77
9
2540
35
17
14
31
1.91
4057--5687
645
2.5
642
90
2
2497
36
17
14
31
1.90
5526--5845
160
2.0
155
84
8
412
35
20
17
27
1.94
4881--6481
797
2.0
797
91
3
2617
35
17
15
30
1.92
5686--7059
321
4.4
320
89
4
2064
36
17
15
30
1.91
5686--7059
627
2.2
628
89
4
2067
36
17
15
30
1.91
7353--11567
323
13.0
320
82
6
4579
35
17
14
32
1.90
7353--11504
970
4.3
959
80
7
4618
35
17
14
32
1.90
7334--11525
653
6.5
646
83
5
4806
35
17
14
32
1.90
11891--12501
322
1.9
314
82
6
766
36
17
14
31
1.90
10919--13094
934
2.3
936
85
3
2916
35
17
14
32
1.91
12306--13694
604
2.3
603
82
4
1625
34
18
15
31
1.93
13444--13953
281
1.8
281
86
6
746
35
16
14
32
1.90
13710--14473
334
2.3
334
82
5
920
36
16
14
33
1.88
14543--14608
27
2.4
27
82
7
80
42
3
7
46
1.47
33456--33566
41
2.7
40
79
12
134
22
9
25
43
1.82
33453--33660
84
2.4
85
85
6
269
24
11
24
39
1.88
33456--33659
43
4.8
42
75
4
160
23
11
24
40
1.88
50141--50249
31
3.5
31
87
7
168
33
22
11
32
1.90
59939--59996
19
3.1
19
70
25
50
44
6
1
46
1.40
60083--60122
2
19.5
2
89
5
62
47
2
0
50
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60583--60637
22
2.5
22
82
5
67
40
10
12
36
1.79
60694--60748
22
2.5
22
75
13
60
36
9
16
38
1.80
60840--61026
22
8.5
22
71
9
105
36
9
17
35
1.83
61238--61293
22
2.5
22
85
0
67
35
7
14
42
1.73

Tables:   1

The End!