Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023871.1 Corchorus olitorius cultivar O-4 contig23904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132166

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1481--1539
21
3.0
19
82
5
73
32
18
11
37
1.87
1482--1539
19
2.9
19
82
5
62
31
18
12
37
1.88
20163--20199
19
1.9
19
88
0
56
40
13
16
29
1.86
41506--41580
29
2.6
29
89
2
116
17
25
16
41
1.89
44391--44421
5
6.0
5
96
3
53
19
0
3
77
0.90
49697--49721
2
12.5
2
100
0
50
52
0
48
0
1.00
54435--54524
45
2.0
44
93
2
153
37
17
10
34
1.84
62279--62303
2
12.5
2
100
0
50
0
48
0
52
1.00
90480--90509
13
2.4
12
94
5
51
80
0
0
20
0.72
100378--100514
68
2.0
68
100
0
274
32
17
10
39
1.83
100647--100684
16
2.3
16
90
4
58
0
36
0
63
0.95
106929--107039
57
2.0
55
82
10
136
28
13
7
50
1.68
109763--109787
4
6.2
4
100
0
50
0
0
24
76
0.80
111595--111682
45
2.0
45
97
0
167
26
9
30
34
1.87
123560--123630
29
2.4
29
83
4
88
38
19
28
14
1.91
124410--124434
13
1.9
13
100
0
50
8
8
4
80
1.03
130434--130605
62
2.8
62
81
4
195
33
23
22
20
1.97
130428--130605
31
5.8
30
80
4
176
33
23
22
20
1.97

Tables:   1

The End!