Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023877.1 Corchorus olitorius cultivar O-4 contig23910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82755

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
524--621
46
2.1
46
96
0
178
25
27
14
32
1.94
3761--3791
2
15.5
2
100
0
62
48
0
0
51
1.00
5765--5967
109
1.9
109
92
2
345
25
28
11
34
1.91
7198--7265
33
2.1
33
100
0
136
30
10
26
32
1.90
7402--7432
12
2.5
12
94
5
53
0
9
0
90
0.46
7790--7838
19
2.5
20
90
6
73
36
12
20
30
1.89
7790--7850
21
3.0
21
81
9
56
37
11
21
29
1.88
11457--11546
3
30.0
3
91
4
146
32
1
2
64
1.13
11840--11877
9
4.3
9
90
3
60
47
0
18
34
1.49
13150--13288
49
2.9
48
79
9
149
27
16
5
51
1.65
29491--29538
21
2.3
21
89
7
71
18
14
58
8
1.61
57816--57921
47
2.3
47
96
0
194
41
13
19
25
1.88
60810--60861
26
2.0
26
96
0
95
26
21
13
38
1.90
62356--62582
66
3.4
66
93
2
393
30
31
9
28
1.89
64020--64319
149
2.0
145
85
5
406
40
18
11
29
1.85
64482--64515
14
2.4
14
95
0
59
32
23
8
35
1.86
70952--70995
23
2.0
22
86
13
63
27
27
13
31
1.94
71634--71663
2
15.0
2
100
0
60
50
0
0
50
1.00
72500--72526
3
9.0
3
100
0
54
33
0
0
66
0.92
77362--77411
24
2.1
24
96
0
91
44
22
2
32
1.64
80971--81026
28
2.0
28
100
0
112
42
10
21
25
1.85

Tables:   1

The End!