Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023881.1 Corchorus olitorius cultivar O-4 contig23914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66154

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1385
327
4.2
325
76
10
1212
34
14
12
38
1.84
1--1387
655
2.1
652
85
4
1867
34
14
12
38
1.84
1409--1527
50
2.4
51
81
1
123
28
15
15
40
1.88
4801--4827
14
1.9
14
100
0
54
51
25
0
22
1.48
6188--6261
36
2.1
36
94
0
130
27
10
24
37
1.88
16401--16441
13
3.2
13
92
0
73
41
7
19
31
1.79
27247--27283
19
1.9
19
94
0
65
16
29
13
40
1.86
27331--27391
19
3.0
20
88
6
97
34
19
9
36
1.85
29332--29357
6
4.3
6
100
0
52
69
15
15
0
1.20
38981--39011
11
2.8
11
100
0
62
32
48
19
0
1.49
41344--41371
3
9.3
3
100
0
56
0
35
0
64
0.94
44105--44196
46
2.0
46
97
0
175
32
18
21
27
1.97
51065--51099
3
11.7
3
93
0
61
71
0
28
0
0.86
54214--54258
21
2.1
21
87
0
63
42
11
15
31
1.82
59056--59102
25
1.9
25
95
4
87
59
4
8
27
1.45

Tables:   1

The End!