Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023882.1 Corchorus olitorius cultivar O-4 contig23915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71719

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24136--24169
17
2.0
17
100
0
68
64
5
5
23
1.38
29517--29544
14
2.0
14
100
0
56
57
7
14
21
1.61
33813--34040
45
5.1
45
92
2
368
27
26
10
35
1.89
45108--45142
17
2.1
17
88
0
52
48
11
11
28
1.74
48803--48831
14
2.0
15
93
6
51
48
13
3
34
1.60
48894--48929
18
2.1
17
94
5
63
38
5
5
50
1.49
49137--49317
22
8.2
22
65
10
66
33
17
11
37
1.86
49447--49677
22
10.5
22
73
12
172
38
13
10
37
1.80
59252--59376
62
2.0
62
95
3
225
41
25
8
24
1.83
67431--67470
21
1.9
21
94
0
71
40
20
27
12
1.88
68669--68716
18
2.7
19
84
15
68
52
0
0
47
1.00
68775--68879
22
4.8
22
77
2
104
39
14
10
36
1.80
68775--68899
22
5.8
21
73
11
101
40
12
10
36
1.78
68775--68878
43
2.4
44
83
1
129
39
13
10
36
1.79
68882--68956
37
2.0
37
92
0
123
38
9
5
46
1.59
70386--70452
3
22.3
3
93
0
116
67
2
0
29
1.06
71313--71368
22
2.5
22
82
0
67
42
14
7
35
1.73
71660--71719
22
2.7
22
81
0
75
33
18
11
36
1.87

Tables:   1

The End!