Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023887.1 Corchorus olitorius cultivar O-4 contig23920, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14009
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32


Found at i:6803 original size:53 final size:53

Alignment explanation


    Indices: 6746--6854  Score: 200
    Period size: 53  Copynumber: 2.1  Consensus size: 53

       6736 AAACTTCATG

                                                                 
       6746 AATATATATACTATATAATATTTTTAGTTATCAAAGAAATTACTAAAAGGCCA
          1 AATATATATACTATATAATATTTTTAGTTATCAAAGAAATTACTAAAAGGCCA

                             *                             *     
       6799 AATATATATACTATATATTATTTTTAGTTATCAAAGAAATTACTAAATGGCCA
          1 AATATATATACTATATAATATTTTTAGTTATCAAAGAAATTACTAAAAGGCCA

               
       6852 AAT
          1 AAT

       6855 TGAGGATTAA


Statistics
Matches: 54,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  53   54  1.00

ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38


Consensus pattern (53 bp):   
AATATATATACTATATAATATTTTTAGTTATCAAAGAAATTACTAAAAGGCCA
Done.