Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023892.1 Corchorus olitorius cultivar O-4 contig23925, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4054
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30


Found at i:3231 original size:15 final size:14

Alignment explanation


    Indices: 3204--3239  Score: 54
    Period size: 15  Copynumber: 2.5  Consensus size: 14

       3194 GTAAAACATT

                          
       3204 AAACAAACAAAACA
          1 AAACAAACAAAACA

                          *
       3218 AAACAAACCAAAACG
          1 AAACAAA-CAAAACA

                   
       3233 AAACAAA
          1 AAACAAA

       3240 GCAACCATTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  14    7  0.35
  15   13  0.65

ACGTcount: A:0.75, C:0.22, G:0.03, T:0.00


Consensus pattern (14 bp):   
AAACAAACAAAACA
Done.