Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023893.1 Corchorus olitorius cultivar O-4 contig23926, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5706
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35


Found at i:1109 original size:15 final size:15

Alignment explanation


    Indices: 1089--1119  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1079 AAGAAGCAAT

                  *        
       1089 AAAAGGTTTTTTCAA
          1 AAAAGGGTTTTTCAA

                           
       1104 AAAAGGGTTTTTCAA
          1 AAAAGGGTTTTTCAA

             
       1119 A
          1 A

       1120 TCATGTTCTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35


Consensus pattern (15 bp):   
AAAAGGGTTTTTCAA
Done.