Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023895.1 Corchorus olitorius cultivar O-4 contig23928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8198
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1292 original size:16 final size:17

Alignment explanation


    Indices: 1271--1305  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1261 CATTTTACTT

                             
       1271 AACT-AAAAAACTTTTC
          1 AACTAAAAAAACTTTTC

                             
       1287 AACTAAAAAAACTTTTC
          1 AACTAAAAAAACTTTTC

              
       1304 AA
          1 AA

       1306 TAGAACAAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  16    4  0.22
  17   14  0.78

ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29


Consensus pattern (17 bp):   
AACTAAAAAAACTTTTC

Done.