Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023897.1 Corchorus olitorius cultivar O-4 contig23930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6931
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:3620 original size:22 final size:21

Alignment explanation


    Indices: 3595--3641  Score: 58
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       3585 CTAAGATGCA

                     *      *     
       3595 TAAAAAAAATAAATCTTAAATC
          1 TAAAAAAAAGAAAT-TGAAATC

                  *              
       3617 TAAAAACAAGAAATTGAAATC
          1 TAAAAAAAAGAAATTGAAATC

                
       3638 TAAA
          1 TAAA

       3642 CCTAAATTGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21   10  0.45
  22   12  0.55

ACGTcount: A:0.64, C:0.09, G:0.04, T:0.23


Consensus pattern (21 bp):   
TAAAAAAAAGAAATTGAAATC
Done.