Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023900.1 Corchorus olitorius cultivar O-4 contig23933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67896

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1785--1864
41
2.0
41
82
9
101
26
17
11
45
1.82
4505--4544
15
2.6
16
88
4
55
62
12
10
15
1.54
8716--8798
40
2.0
41
93
2
141
49
8
10
31
1.68
15241--15286
23
2.0
24
91
4
76
41
28
15
15
1.87
15831--16154
178
1.8
178
88
4
501
34
15
15
34
1.89
16685--16721
19
1.9
19
100
0
74
16
37
13
32
1.87
17256--17286
13
2.4
13
94
0
53
41
41
0
16
1.48
18503--18542
21
2.1
19
86
13
55
20
27
15
37
1.92
19453--19545
38
2.5
37
91
3
143
41
13
9
34
1.78
19966--19998
15
2.2
15
94
0
57
51
6
36
6
1.51
19971--20006
15
2.3
15
90
4
54
52
5
36
5
1.48
21338--21404
33
2.0
33
97
0
125
29
29
7
32
1.85
21457--21512
17
3.4
17
71
14
62
60
8
1
28
1.37
21458--21508
16
3.1
16
68
15
50
60
9
1
27
1.39
21452--21523
33
2.2
33
97
0
135
58
8
4
29
1.46
25992--26610
316
2.0
316
93
1
1055
31
21
15
31
1.94
34691--34785
29
3.3
29
96
0
172
30
29
6
33
1.82
38700--38730
16
1.9
16
100
0
62
16
6
19
58
1.59
38818--38850
12
2.5
13
90
9
50
24
6
24
45
1.75
39658--39885
41
5.5
41
80
9
273
41
26
9
21
1.84
39606--39900
84
3.5
83
86
5
414
39
25
11
23
1.88
39957--39981
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43517--43596
26
3.0
26
78
12
81
22
15
23
38
1.92
45778--45938
82
2.0
82
92
0
268
27
17
11
43
1.84
45778--45952
41
4.3
41
86
1
235
26
18
12
42
1.85
67216--67255
17
2.2
17
86
8
53
45
5
22
27
1.73

Tables:   1

The End!