Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023905.1 Corchorus olitorius cultivar O-4 contig23938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54019

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
763--893
41
3.2
40
95
2
226
17
25
19
37
1.94
841--953
58
1.9
58
83
3
147
17
25
18
38
1.93
801--993
98
2.0
97
82
6
237
16
26
19
37
1.93
899--1099
40
5.0
40
78
11
212
15
23
20
39
1.91
891--1100
81
2.6
81
90
1
305
16
23
20
39
1.92
767--1034
139
1.9
139
84
6
364
16
24
20
38
1.93
1123--1223
40
2.5
40
85
0
121
13
30
21
33
1.93
1186--1886
48
14.2
47
78
10
668
13
22
19
43
1.86
1184--1886
96
7.1
96
85
6
965
13
22
19
43
1.86
1184--1885
144
4.7
144
81
8
897
13
22
19
43
1.87
1606--1735
68
1.9
68
95
0
233
14
22
16
46
1.84
1562--1792
116
2.0
116
90
0
363
14
21
18
46
1.84
1510--1837
164
2.0
164
92
0
539
14
21
18
45
1.85
1488--1920
212
2.0
212
93
0
751
13
23
19
43
1.86
2944--3004
27
2.2
29
85
5
81
75
1
9
13
1.12
3257--3308
26
2.0
26
85
7
70
69
5
3
21
1.26
8314--8349
19
1.9
18
88
5
54
41
2
22
33
1.68
13862--13894
17
1.9
17
93
0
57
48
12
12
27
1.76
14735--14770
19
1.9
18
88
5
54
41
2
22
33
1.68
19179--19331
39
3.9
40
80
5
161
29
8
26
35
1.86
20899--20997
28
3.5
28
85
0
135
39
26
16
18
1.91
21254--21528
35
7.9
35
95
0
478
26
21
18
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24260--24354
41
2.3
41
85
0
118
46
13
14
25
1.82
25395--25445
26
2.0
26
100
0
102
31
13
47
7
1.72
28314--28370
16
3.6
16
70
0
60
43
26
7
22
1.78
28316--28393
32
2.4
32
100
0
156
46
21
8
23
1.79
28332--28386
16
3.4
16
69
0
56
50
18
9
21
1.74
32529--32553
2
12.5
2
100
0
50
52
0
0
48
1.00
35660--35713
25
2.2
25
87
12
76
27
16
9
46
1.78
35679--35803
60
2.1
59
82
8
146
31
19
4
44
1.71
40139--40184
16
2.9
16
78
15
51
60
8
8
21
1.53
40155--40191
16
2.3
16
90
0
56
59
10
10
18
1.59
40144--40194
15
3.3
15
79
12
59
60
11
7
19
1.55

Tables:   1

The End!