Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002391.1 Corchorus olitorius cultivar O-4 contig02391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28


Found at i:470 original size:21 final size:21

Alignment explanation


    Indices: 446--558  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        436 CTTAGGCATT

                         *       
        446 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        467 TCCAATGATCTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *    *     * 
        488 TCCAATGAACTTGCAACCTGC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        509 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        530 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        551 TCCAATGA
          1 TCCAATGA

        559 ACTTCTAGCA


Statistics
Matches: 83,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   81  0.98

ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.