Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023913.1 Corchorus olitorius cultivar O-4 contig23946, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71615

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1407--1446
3
14.3
3
80
15
50
35
2
0
62
1.09
1407--1448
8
5.1
8
88
5
66
35
2
0
61
1.09
4484--4519
1
36.0
1
100
0
72
0
0
0
100
0.00
13328--13384
21
2.7
21
94
0
96
36
7
28
28
1.83
14047--14080
11
3.1
11
100
0
68
38
8
44
8
1.67
20458--20491
11
3.1
11
100
0
68
38
8
44
8
1.67
22515--22577
30
2.1
30
91
5
101
26
17
36
19
1.94
47057--47103
13
3.8
12
78
13
51
55
4
0
40
1.19
55659--55694
14
2.7
13
87
8
54
80
0
19
0
0.71
55740--55802
12
5.1
12
75
11
56
76
0
20
3
0.93
55740--55802
13
5.0
13
70
12
51
76
0
20
3
0.93
58614--58650
5
7.4
5
100
0
74
59
0
0
40
0.97
59345--59408
3
21.3
3
96
0
119
31
0
1
67
1.00
62229--62264
10
3.6
10
88
0
54
47
19
2
30
1.64
62704--62745
18
2.4
18
80
4
50
40
2
2
54
1.26
62732--62764
15
2.2
15
94
0
57
57
3
6
33
1.38
67929--67980
16
3.3
16
86
5
70
15
48
34
1
1.56
67937--67985
16
3.1
16
88
5
73
14
44
36
4
1.64
70622--70656
2
18.5
2
88
11
56
54
0
0
45
0.99
70823--70847
13
1.9
13
100
0
50
44
0
0
56
0.99
70901--70977
39
2.0
39
87
5
111
42
12
27
16
1.85

Tables:   1

The End!