Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002392.1 Corchorus olitorius cultivar O-4 contig02392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27


Found at i:130 original size:21 final size:21

Alignment explanation


    Indices: 104--145  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         94 GGCCCTCCTG

                                 
        104 ACTTGAAAGCAGAAGTCTTTC
          1 ACTTGAAAGCAGAAGTCTTTC

                                 
        125 ACTTGAAAGCAGAAGTCTTTC
          1 ACTTGAAAGCAGAAGTCTTTC

        146 TAGGATGCAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Consensus pattern (21 bp):   
ACTTGAAAGCAGAAGTCTTTC
Done.