Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023922.1 Corchorus olitorius cultivar O-4 contig23955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30637

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
555--610
19
3.2
19
76
23
77
23
19
21
35
1.96
10263--10339
28
2.8
28
91
0
127
16
16
25
40
1.90
13120--13208
41
2.2
41
83
4
108
28
12
12
47
1.77
21280--21321
21
2.0
21
90
0
66
35
26
16
21
1.94
22197--22237
21
2.0
21
90
4
66
36
29
14
19
1.92
24445--24487
12
3.8
11
82
14
52
79
0
18
2
0.85
24439--24495
16
3.4
16
79
9
60
78
0
19
1
0.83
27387--28225
424
2.0
424
88
1
1270
30
18
17
33
1.94
30091--30120
7
4.4
7
95
4
53
0
23
0
76
0.78

Tables:   1

The End!