Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023924.1 Corchorus olitorius cultivar O-4 contig23957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22810

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1062--1104
22
2.0
22
86
4
61
18
6
0
74
1.04
3308--3364
17
3.5
16
81
9
62
0
21
1
77
0.86
3309--3361
12
4.2
13
76
9
56
0
18
1
79
0.83
3406--3453
12
4.0
11
77
17
51
0
20
0
79
0.74
3485--3540
21
2.6
21
80
2
58
7
7
8
76
1.15
8272--8351
40
2.0
40
92
0
133
35
16
3
45
1.65
15137--15169
15
2.3
15
94
5
59
69
12
0
18
1.18
19670--19716
11
4.5
11
81
10
62
27
0
0
72
0.85
19693--19738
19
2.4
20
78
10
60
30
2
0
67
1.03
19670--19735
29
2.2
30
86
13
91
25
1
0
72
0.93
20260--20403
72
2.0
72
100
0
288
43
9
29
18
1.81
21669--21765
28
3.5
28
91
5
144
15
17
26
40
1.89
21965--22136
85
2.0
85
100
0
344
35
8
22
34
1.84

Tables:   1

The End!