Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023925.1 Corchorus olitorius cultivar O-4 contig23958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28212

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5490--5558
34
2.1
32
86
13
95
66
14
1
17
1.32
5508--5565
5
11.6
5
78
14
57
65
15
1
17
1.36
5493--5564
39
1.9
35
86
10
99
66
15
1
16
1.32
6179--6321
50
2.9
50
85
2
198
30
18
17
33
1.94
7095--7273
50
3.6
50
92
1
290
34
11
26
27
1.91
7494--7589
28
3.5
27
80
7
104
15
16
28
39
1.89
7515--7589
28
2.7
28
97
0
141
16
18
28
37
1.92
12886--12945
31
1.9
31
89
0
93
33
8
20
38
1.82
15558--15585
3
9.3
3
100
0
56
0
0
64
35
0.94
21781--21850
30
2.4
29
82
2
77
32
30
14
22
1.94
22042--22111
29
2.4
30
90
2
106
22
11
28
37
1.89
22255--22321
33
2.0
34
94
2
118
37
14
5
41
1.71

Tables:   1

The End!