Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023926.1 Corchorus olitorius cultivar O-4 contig23959, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49535

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
750--785
15
2.2
16
85
14
56
58
5
0
36
1.22
707--762
2
27.5
2
84
13
62
48
7
0
44
1.30
754--785
15
2.2
15
94
5
57
59
6
0
34
1.23
1665--1693
2
14.5
2
100
0
58
48
0
0
51
1.00
6512--6559
21
2.3
21
100
0
96
47
4
8
39
1.53
6512--6578
21
3.1
23
83
10
79
47
4
5
41
1.48
6598--6644
19
2.4
20
96
3
87
57
0
0
42
0.98
9977--10023
26
1.9
24
87
12
69
27
27
4
40
1.75
15929--16231
76
4.0
76
94
0
534
21
34
26
18
1.96
19871--19914
23
1.9
23
90
0
70
40
9
6
43
1.63
30260--30311
26
2.0
26
96
0
95
42
19
17
21
1.89
34405--34463
31
1.9
31
89
0
91
28
16
5
49
1.67
40510--40665
80
2.0
79
90
1
249
23
31
11
33
1.90
44809--45489
367
1.9
367
84
2
938
40
13
14
31
1.85
47601--47659
27
2.1
29
84
6
77
25
6
28
38
1.81
47592--47677
31
2.9
29
76
15
77
25
5
30
38
1.79
49443--49514
28
2.4
30
84
6
94
30
18
9
41
1.82

Tables:   1

The End!