Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023927.1 Corchorus olitorius cultivar O-4 contig23960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86643

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--384
31
2.5
31
88
4
116
39
9
21
29
1.85
7762--7811
25
2.0
25
96
0
91
30
4
14
52
1.59
10719--10761
22
2.0
22
86
9
61
27
4
0
67
1.10
12537--12592
23
2.3
24
85
14
71
48
28
5
17
1.69
12619--12660
17
2.5
16
85
11
57
38
23
14
23
1.92
13737--13921
49
3.8
49
93
2
309
15
25
17
41
1.89
13725--13928
48
4.2
48
89
3
309
15
23
15
45
1.84
13737--13921
97
1.9
100
94
3
331
15
25
17
41
1.89
17534--17618
30
2.8
30
85
10
118
51
20
5
22
1.68
19995--20087
30
3.1
30
85
0
114
29
4
26
39
1.75
23101--23141
21
2.0
21
85
9
57
24
4
0
70
1.06
23103--23152
24
2.1
24
81
7
57
22
4
4
70
1.21
23763--23802
3
13.3
3
100
0
80
67
0
0
32
0.91
25516--25553
18
2.1
18
95
0
67
31
7
15
44
1.75
29023--29051
8
3.6
8
100
0
58
10
0
10
79
0.94
31782--31823
21
2.0
22
85
4
59
30
2
33
33
1.71
32581--32624
23
1.9
23
95
0
79
38
20
11
29
1.87
33087--33464
50
7.5
50
92
2
607
24
26
12
37
1.90
33189--33263
23
3.1
23
66
26
64
24
26
10
38
1.88
33196--33329
27
5.3
27
63
26
85
24
28
11
35
1.91
33273--33352
23
3.3
23
65
19
63
18
30
12
38
1.88
33697--34369
64
10.5
64
87
2
841
27
23
14
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33697--34369
257
2.6
256
85
2
859
27
23
14
34
1.94
33697--34369
193
3.5
192
85
2
886
27
23
14
34
1.94
41643--41686
23
1.9
23
95
0
79
38
20
11
29
1.87
41969--42030
20
3.1
20
72
9
72
53
9
20
16
1.71
42961--43698
368
2.0
368
97
0
1404
28
17
22
30
1.97
45546--45594
19
2.6
17
81
12
53
24
6
0
69
1.11
45565--45621
27
2.1
27
83
6
71
26
8
1
63
1.34
45545--45638
45
2.1
44
84
9
129
24
8
1
65
1.27
48252--48288
11
3.5
11
85
7
58
86
0
13
0
0.57
48254--48288
10
3.4
10
92
7
61
88
0
11
0
0.51
48253--48288
13
2.7
13
86
4
54
88
0
11
0
0.50
48724--48786
26
2.4
25
85
12
83
73
1
19
6
1.13
48729--48767
21
1.9
20
89
5
60
74
0
20
5
1.01
48970--49051
41
2.0
42
90
2
130
31
10
10
46
1.74
50180--50229
25
2.0
25
92
0
82
34
2
10
54
1.45
56149--56181
11
3.0
11
95
0
57
42
27
0
30
1.56
63117--63152
19
1.9
18
88
5
54
33
22
2
41
1.68
74633--74679
26
1.9
23
87
12
67
40
4
27
27
1.75

Tables:   1

The End!