Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023928.1 Corchorus olitorius cultivar O-4 contig23961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7748

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3012--3336
163
2.0
164
84
5
433
36
10
9
44
1.71
3349--3387
20
2.0
20
85
10
53
28
5
2
64
1.28
3552--3678
22
5.9
22
73
10
100
36
10
17
36
1.84
3554--3732
68
2.7
66
82
6
186
34
8
18
38
1.81
3552--3732
22
8.2
21
70
18
75
34
8
18
38
1.81
3768--3929
44
3.7
43
78
7
157
37
7
17
37
1.78
3619--3890
149
1.8
147
81
9
338
36
7
17
38
1.79
3768--3929
66
2.5
65
78
8
166
37
7
17
37
1.78
3969--4052
21
3.7
24
77
13
72
40
10
15
33
1.82
3768--4159
22
17.6
22
69
15
121
39
9
16
34
1.80
4265--4721
22
21.0
22
70
7
229
37
10
16
35
1.83
4764--4815
22
2.4
22
83
6
61
42
3
19
34
1.69

Tables:   1

The End!