Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023929.1 Corchorus olitorius cultivar O-4 contig23962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60132

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12326--12390
12
4.9
12
82
15
76
81
0
13
4
0.84
12325--12396
7
10.4
7
88
8
87
81
0
13
4
0.82
12326--12390
22
3.3
18
83
16
76
81
0
13
4
0.84
20979--21020
21
2.0
21
90
4
68
4
16
2
76
1.07
20991--21029
13
2.9
14
81
14
55
7
17
0
74
1.05
23383--23423
18
2.3
18
86
0
55
14
14
17
53
1.73
23380--23414
18
1.9
18
94
0
61
14
17
17
51
1.77
25408--25482
28
2.7
28
87
4
98
41
28
16
14
1.87
25613--25643
5
6.2
5
92
0
53
64
19
16
0
1.29
28736--28777
21
2.0
21
95
0
75
21
19
26
33
1.97
28857--30275
710
2.0
710
99
0
2829
27
16
20
36
1.93
31109--31153
20
2.2
21
84
4
56
68
6
6
17
1.33
34812--34836
8
3.1
8
100
0
50
84
0
0
16
0.63
39069--39111
22
2.0
22
85
0
59
23
32
23
20
1.98
44395--44478
4
21.2
4
69
20
52
67
0
7
25
1.15
44415--44490
18
4.2
18
70
21
52
65
0
7
26
1.19
44451--44500
12
4.2
12
75
12
50
64
0
8
28
1.22
44524--44595
19
4.3
18
75
18
59
62
1
9
26
1.34
44532--44588
27
2.1
27
87
6
80
64
1
7
26
1.28
47773--47914
72
2.0
72
97
0
266
28
16
11
42
1.83
49691--49724
9
3.9
9
88
7
52
85
0
0
14
0.60
49691--49724
17
2.0
17
94
0
59
85
0
0
14
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54089--54126
16
2.3
17
86
4
51
10
7
0
81
0.87
55268--55316
21
2.3
21
82
6
55
40
16
28
14
1.87
58013--58046
8
4.1
8
92
3
50
35
11
2
50
1.54
59463--59832
29
12.8
29
79
6
392
21
19
21
38
1.94
59463--59832
57
6.4
58
80
3
397
21
19
21
38
1.94
59463--59834
115
3.2
114
82
3
404
21
19
21
38
1.94
59463--59832
144
2.5
145
90
1
553
21
19
21
38
1.94

Tables:   1

The End!