Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002393.1 Corchorus olitorius cultivar O-4 contig02393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:478 original size:23 final size:23

Alignment explanation


    Indices: 450--495  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        440 TTTTCGTGAG

                                   
        450 ATTCTTTTAGCTAAGGTTTCGTT
          1 ATTCTTTTAGCTAAGGTTTCGTT

                                   
        473 ATTCTTTTAGCTAAGGTTTCGTT
          1 ATTCTTTTAGCTAAGGTTTCGTT

        496 TTGGATAGGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52


Consensus pattern (23 bp):   
ATTCTTTTAGCTAAGGTTTCGTT
Done.