Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023930.1 Corchorus olitorius cultivar O-4 contig23963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2622
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:2117 original size:16 final size:15

Alignment explanation


    Indices: 2082--2110  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       2072 TAGGATAGAA

                           
       2082 AATTGTTTGTTTTTG
          1 AATTGTTTGTTTTTG

                          
       2097 AATTGTTTGTTTTT
          1 AATTGTTTGTTTTT

       2111 TGGATTGATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69


Consensus pattern (15 bp):   
AATTGTTTGTTTTTG
Done.