Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023945.1 Corchorus olitorius cultivar O-4 contig23978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32121

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3051--3090
21
1.9
21
89
0
62
30
20
17
32
1.95
7260--7297
19
2.1
19
90
5
60
36
7
7
47
1.62
8983--9029
26
1.9
24
87
12
69
27
25
6
40
1.80
15374--15450
29
2.6
29
79
6
84
12
16
14
55
1.69
15778--16673
440
2.0
438
86
4
1236
41
13
13
31
1.83
19582--19704
65
1.9
65
91
0
201
22
29
26
21
1.99
24637--24661
12
2.1
12
100
0
50
40
0
8
52
1.31
26467--26492
2
13.0
2
100
0
52
50
0
0
50
1.00
27514--27652
33
4.2
33
87
0
143
36
20
14
28
1.92
27638--27786
64
2.3
64
84
2
183
38
16
10
34
1.83
31004--31133
65
2.0
65
87
0
188
23
28
25
22
1.99

Tables:   1

The End!