Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023947.1 Corchorus olitorius cultivar O-4 contig23980, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3468
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28


Found at i:2159 original size:14 final size:15

Alignment explanation


    Indices: 2140--2169  Score: 53
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       2130 GAGAACATGA

                           
       2140 TTTGAAAA-ACCTTT
          1 TTTGAAAACACCTTT

                           
       2154 TTTGAAAACACCTTT
          1 TTTGAAAACACCTTT

             
       2169 T
          1 T

       2170 ATTGCTTCTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    8  0.53
  15    7  0.47

ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43


Consensus pattern (15 bp):   
TTTGAAAACACCTTT

Done.