Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023952.1 Corchorus olitorius cultivar O-4 contig23985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14493

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1439--1490
16
3.5
15
75
15
54
34
0
7
57
1.27
4154--4453
107
2.8
107
83
4
315
42
6
8
43
1.59
4204--4483
107
2.6
105
84
4
366
42
6
7
43
1.59
5109--5171
16
4.1
16
76
15
69
9
17
31
41
1.82
5403--5484
42
2.0
42
95
0
146
36
4
19
39
1.73
6190--6521
166
2.0
165
87
4
472
36
11
9
42
1.74
6927--6969
22
1.9
23
95
4
79
37
13
23
25
1.92
9261--9313
26
2.1
25
85
3
70
28
20
13
37
1.90
11951--11993
22
1.9
23
95
4
79
37
13
23
25
1.92
12131--12822
44
15.3
44
68
16
171
37
8
17
35
1.81
12129--12358
66
3.5
66
78
5
230
35
7
17
39
1.79
12131--12325
22
8.8
22
73
10
139
36
8
15
39
1.78
12379--12572
22
8.9
21
76
13
135
34
7
21
37
1.82
12367--12804
66
6.6
65
69
16
204
37
9
18
34
1.83
12455--12804
22
15.7
22
70
15
141
38
9
17
35
1.81
12700--12826
22
5.9
21
77
7
69
44
9
12
33
1.75
13307--13620
22
14.5
22
71
10
186
38
9
16
34
1.82
13517--13579
23
2.7
23
92
0
99
38
6
17
38
1.75
13563--13631
22
3.1
22
85
4
86
36
13
14
36
1.85

Tables:   1

The End!