Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023953.1 Corchorus olitorius cultivar O-4 contig23986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12736

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--79
5
15.8
5
78
13
54
78
0
20
1
0.82
20--74
4
13.5
4
83
7
58
78
0
21
0
0.76
11--72
22
2.7
23
80
9
65
79
0
20
0
0.74
1--74
26
3.0
25
79
11
82
78
0
20
1
0.83
21--79
15
3.9
15
82
8
66
79
0
20
0
0.73
879--938
27
2.2
28
84
3
77
23
25
13
38
1.91
1335--1387
12
4.4
13
81
11
60
39
5
9
45
1.60
2396--2520
22
5.6
23
75
9
98
35
12
16
36
1.86
2576--2625
22
2.2
22
82
10
57
46
12
14
28
1.79
3865--3895
14
2.3
14
94
5
55
77
16
0
6
0.97
5553--5588
4
9.0
4
93
0
54
75
19
0
5
1.00
5558--5596
12
3.2
12
88
0
51
79
12
0
7
0.93
5566--5602
16
2.2
17
90
4
58
75
10
0
13
1.04
6267--6328
31
2.0
31
93
0
106
32
19
3
45
1.66
6364--6531
93
1.8
92
90
1
273
33
12
1
51
1.50
6450--6603
71
2.2
71
91
0
245
33
12
1
51
1.50
7317--7373
25
2.4
24
82
5
62
28
3
7
61
1.39

Tables:   1

The End!