Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023955.1 Corchorus olitorius cultivar O-4 contig23988, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21758

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--615
30
20.5
30
81
5
647
48
17
13
20
1.81
167--225
25
2.4
25
85
5
75
50
8
13
27
1.70
778--1336
168
3.4
168
90
3
842
33
17
20
28
1.95
1382--1556
69
2.5
69
93
0
287
27
17
29
26
1.97
1382--1577
69
2.8
67
85
6
266
28
17
28
25
1.97
3197--3258
29
2.1
31
90
6
101
16
3
11
69
1.31
3623--3674
8
6.5
8
80
8
61
15
11
0
73
1.11
3630--3675
15
2.9
16
87
9
67
13
13
0
73
1.09
3623--3673
24
2.2
24
85
3
68
15
11
0
72
1.12
7445--7493
18
2.9
17
82
8
64
12
22
2
63
1.39
10592--10620
14
2.1
14
93
6
51
0
0
13
86
0.58
11043--11167
27
4.6
26
81
11
103
35
24
18
22
1.96
11069--11169
27
3.7
27
86
1
130
35
22
18
22
1.96
16284--16863
298
1.9
298
96
0
1070
31
13
18
35
1.90
17740--17771
15
2.1
15
100
0
64
21
25
0
53
1.46
18258--18288
16
1.9
16
100
0
62
51
0
6
41
1.27

Tables:   1

The End!