Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023959.1 Corchorus olitorius cultivar O-4 contig23992, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13279
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30


Found at i:1763 original size:19 final size:18

Alignment explanation


    Indices: 1730--1765  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1720 TTGAGATAAT

                              
       1730 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
       1748 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

       1766 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA

Found at i:6414 original size:13 final size:13

Alignment explanation


    Indices: 6396--6425  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       6386 TGGATTAGGG

                        *
       6396 TTTTCTTTTTTTC
          1 TTTTCTTTTTTTA

                         
       6409 TTTTCTTTTTTTA
          1 TTTTCTTTTTTTA

                
       6422 TTTT
          1 TTTT

       6426 GATTGGGTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87


Consensus pattern (13 bp):   
TTTTCTTTTTTTA
Done.