genome.fa.s23960.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023960.1 Corchorus olitorius cultivar O-4 contig23993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74475

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920--966	1	47.0	1	100	0	94	100	0	0	0	0.00
5356--5397	21	2.0	21	90	0	66	19	19	28	33	1.96
6255--6301	26	1.9	24	83	12	60	27	27	6	38	1.81
6741--6781	21	2.0	21	85	9	57	34	9	26	29	1.88
7609--7765	42	3.7	43	76	10	153	38	8	1	52	1.40
7635--7768	30	4.7	29	71	18	84	39	7	0	52	1.35
7671--7709	16	2.5	15	84	12	51	43	5	0	51	1.24
7649--7768	13	8.5	13	67	14	60	40	6	0	52	1.33
7609--7765	86	1.8	85	89	6	246	38	8	1	52	1.40
7636--7768	44	3.1	44	81	3	180	39	7	0	51	1.35
7733--7803	35	2.0	35	88	0	106	38	8	0	53	1.31
10940--10980	21	2.0	21	90	9	66	34	9	24	31	1.88
12051--12114	33	1.9	33	90	6	103	20	9	23	46	1.79
16432--16592	33	4.9	33	89	0	250	27	21	24	26	1.99
18955--18996	21	2.0	21	95	0	75	21	14	26	38	1.91
21566--21591	8	3.2	8	100	0	52	42	23	0	34	1.54
21640--21683	21	2.1	21	91	0	70	34	27	25	13	1.93
21872--21950	33	2.4	33	97	2	149	16	30	41	11	1.83
23674--23708	17	2.0	18	94	5	63	28	0	11	60	1.32
26865--27022	37	4.5	35	78	13	155	34	18	16	30	1.94
26865--27026	70	2.3	70	87	3	218	35	19	16	29	1.93
27004--27156	53	2.9	51	77	9	130	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27179--27214	18	2.1	18	89	5	56	19	2	13	63	1.41
27643--27685	20	2.3	19	88	8	61	60	9	4	25	1.47
31100--31171	33	2.2	33	92	0	117	41	16	27	13	1.87
31743--31776	17	1.9	18	88	5	52	44	14	17	23	1.86
32067--32263	34	6.0	33	81	5	213	38	14	23	23	1.92
32266--32606	39	8.7	39	93	0	556	32	17	17	32	1.93
32611--32797	56	3.3	56	94	1	313	42	11	21	25	1.86
32674--32764	30	3.2	30	60	12	73	42	12	21	23	1.86
32777--32827	22	2.3	23	77	19	63	45	3	21	29	1.70
32767--33172	36	11.2	36	74	17	271	45	3	20	30	1.67
32813--33195	14	27.1	14	70	20	166	46	3	20	30	1.66
32784--32840	22	2.7	22	83	5	73	45	3	22	28	1.69
32828--33208	22	17.9	21	71	19	126	46	3	20	30	1.66
33000--33150	6	22.2	6	70	27	67	47	1	18	32	1.60
32777--33165	8	53.9	7	66	23	127	46	3	20	30	1.67
33141--33213	36	2.0	36	86	5	103	47	4	23	24	1.69
33052--33210	86	1.8	86	91	0	264	46	3	20	30	1.66
33242--33895	96	6.8	96	93	1	963	36	18	22	22	1.95
35074--35131	22	2.6	22	86	5	73	31	13	6	48	1.69
35749--35790	7	5.9	7	85	2	57	0	16	0	83	0.65
35749--35790	15	2.9	15	89	3	59	0	16	0	83	0.65
36193--36288	48	2.0	48	91	0	156	31	12	8	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38446--38685	37	6.5	37	82	8	251	37	17	17	27	1.92
38446--38685	73	3.3	74	83	5	247	37	17	17	27	1.92
38667--38816	53	2.8	53	83	3	196	36	13	19	30	1.90
42044--42107	33	1.9	33	93	0	110	40	17	28	14	1.88
42657--42690	17	1.9	18	88	5	52	44	14	17	23	1.86
44152--44195	15	2.9	15	83	12	54	54	2	2	40	1.25
44219--44267	21	2.3	22	89	10	75	57	4	0	38	1.18
44320--44404	3	28.3	3	73	9	66	58	4	1	35	1.26
44615--44737	45	2.8	43	90	6	194	39	21	6	32	1.79
48388--48434	26	1.9	24	87	12	69	40	4	27	27	1.75
49269--49321	21	2.5	21	90	0	88	33	15	18	32	1.92
53773--53813	21	1.9	22	85	5	57	9	17	29	43	1.80
59983--60051	18	3.8	18	69	7	59	15	30	23	30	1.96
68416--68445	15	1.9	16	93	6	53	83	3	13	0	0.77
68629--68735	53	2.0	53	100	0	214	22	23	16	37	1.94
72690--74475	154	11.6	154	89	2	2771	40	18	18	22	1.91

Tables:   1

The End!