Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01023960.1 Corchorus olitorius cultivar O-4 contig23993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74475
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:924 original size:1 final size:1
Alignment explanation
Indices: 920--966 Score: 94
Period size: 1 Copynumber: 47.0 Consensus size: 1
910 ATTTTTTCAG
920 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
967 CCTACTATGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:5380 original size:21 final size:21
Alignment explanation
Indices: 5356--5397 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
5346 TCACAAAGAA
*
5356 GTTTCAAGCTCATCGGAGTTG
1 GTTTCAAGCCCATCGGAGTTG
*
5377 GTTTCAAGCCCATTGGAGTTG
1 GTTTCAAGCCCATCGGAGTTG
5398 CTTAAGGTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (21 bp):
GTTTCAAGCCCATCGGAGTTG
Found at i:6291 original size:25 final size:24
Alignment explanation
Indices: 6255--6301 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
6245 TCCTTCTATT
*
6255 CATCTATCATC-AAGTTTTTCATC
1 CATCTATCATCAAAGGTTTTCATC
6278 CATCTCATCCATCAAAGGTTTTCA
1 CATCT-AT-CATCAAAGGTTTTCA
6302 AATTTTCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 2 0.10
25 4 0.20
26 9 0.45
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.38
Consensus pattern (24 bp):
CATCTATCATCAAAGGTTTTCATC
Found at i:6767 original size:21 final size:21
Alignment explanation
Indices: 6741--6781 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6731 TTTAAACCCT
6741 ATTGGAGAC-AAGTGGTACTAA
1 ATTGGA-ACTAAGTGGTACTAA
*
6762 ATTGGATCTAAGTGGTACTA
1 ATTGGAACTAAGTGGTACTA
6782 GGGTTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
ATTGGAACTAAGTGGTACTAA
Found at i:7655 original size:42 final size:43
Alignment explanation
Indices: 7609--7765 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 43
7599 TTTATTTTGC
* * *
7609 TAATTTCTAAAT-TTTTTTCTCGATAATATTTCATTACATATA
1 TAATTTATAAATATTTTTTCTAGATTATATTTCATTACATATA
* * * * *
7651 TAATTTATAAATATTATTTC-AAATTATATTTTC-TAAAATTTA
1 TAATTTATAAATATTTTTTCTAGATTATA-TTTCATTACATATA
*
7693 TAATTTCTAAATATTATTTTCTAG-TTATAATTTCATTACATATA
1 TAATTTATAAATATT-TTTTCTAGATTAT-ATTTCATTACATATA
*
7737 TAATTTATAAATATTATTTCCTA-ATTATA
1 TAATTTATAAATATT-TTTTCTAGATTATA
7766 ATTATATCAT
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 36 0.39
43 23 0.25
44 33 0.36
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (43 bp):
TAATTTATAAATATTTTTTCTAGATTATATTTCATTACATATA
Found at i:7670 original size:30 final size:29
Alignment explanation
Indices: 7635--7768 Score: 84
Period size: 30 Copynumber: 4.7 Consensus size: 29
7625 TTCTCGATAA
7635 TATTTCATTACATATATAATTTATAAATAT
1 TATTTCA-TACATATATAATTTATAAATAT
* *
7665 TATTTCA-A-AT-TATATTTTCTAAAATTTAT
1 TATTTCATACATATATAATTTAT-AAA--TAT
* * * * **
7694 AATTTC-TAAATAT-TATTTTCTAGTTAT
1 TATTTCATACATATATAATTTATAAATAT
*
7721 AATTTCATTACATATATAATTTATAAATAT
1 TATTTCA-TACATATATAATTTATAAATAT
*
7751 TATTTCCTA-AT-TATAATT
1 TATTTCATACATATATAATT
7769 ATATCATTTC
Statistics
Matches: 83, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
26 8 0.10
27 21 0.25
28 3 0.04
29 18 0.22
30 32 0.39
31 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (29 bp):
TATTTCATACATATATAATTTATAAATAT
Found at i:7689 original size:15 final size:15
Alignment explanation
Indices: 7671--7709 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7661 ATATTATTTC
*
7671 AAATTATATTTTCTA
1 AAATTATAATTTCTA
7686 AAATTTATAATTTCTA
1 AAA-TTATAATTTCTA
7702 AATATTAT
1 AA-ATTAT
7710 TTTCTAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 17 0.81
17 1 0.05
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATTATAATTTCTA
Found at i:7726 original size:13 final size:13
Alignment explanation
Indices: 7649--7768 Score: 60
Period size: 13 Copynumber: 8.5 Consensus size: 13
7639 TCATTACATA
* *
7649 TATAATTTATAAA
1 TATAATTTCTAAT
* *
7662 TATTATTTCAAAT
1 TATAATTTCTAAT
*
7675 TATATTTTCTAAAATT
1 TATAATTTCT--AA-T
*
7691 TATAATTTCTAAA
1 TATAATTTCTAAT
* *
7704 TATTATTTTCTAGT
1 TA-TAATTTCTAAT
7718 TATAATTTCATTACAT
1 TATAATTTC--TA-AT
* *
7734 ATATAATTTATAAA
1 -TATAATTTCTAAT
*
7748 TATTATTTCCTAAT
1 TATAATTT-CTAAT
7762 TATAATT
1 TATAATT
7769 ATATCATTTC
Statistics
Matches: 78, Mismatches: 20, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
13 31 0.40
14 22 0.28
15 6 0.08
16 11 0.14
17 8 0.10
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.53
Consensus pattern (13 bp):
TATAATTTCTAAT
Found at i:7728 original size:86 final size:85
Alignment explanation
Indices: 7609--7765 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 85
7599 TTTATTTTGC
*
7609 TAATTTCTAAATTTTTTTCTCGATAATATTTCATTACATATATAATTTATAAATATTATTT-CAA
1 TAATTTCTAAATTTTTTTCTAGATAATATTTCATTACATATATAATTTATAAATATTATTTCCAA
7673 ATTATATTTTCTAAAATTTA
66 ATTATATTTTCTAAAATTTA
*
7693 TAATTTCTAAATATTATTTTCTAG-TTATAATTTCATTACATATATAATTTATAAATATTATTTC
1 TAATTTCTAAAT-TT-TTTTCTAGATAAT-ATTTCATTACATATATAATTTATAAATATTATTTC
*
7757 CTAATTATA
63 CAAATTATA
7766 ATTATATCAT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
84 12 0.18
85 5 0.08
86 41 0.62
87 8 0.12
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (85 bp):
TAATTTCTAAATTTTTTTCTAGATAATATTTCATTACATATATAATTTATAAATATTATTTCCAA
ATTATATTTTCTAAAATTTA
Found at i:7748 original size:44 final size:44
Alignment explanation
Indices: 7636--7768 Score: 180
Period size: 44 Copynumber: 3.1 Consensus size: 44
7626 TCTCGATAAT
*
7636 ATTTCATTACATATATAATTTATAAATATTA-TTTCAAATTATA
1 ATTTCATTACATATATAATTTATAAATATTATTTTCTAATTATA
* * * * * *
7679 TTTTC-TAAAATTTATAATTTCTAAATATTATTTTCTAGTTATA
1 ATTTCATTACATATATAATTTATAAATATTATTTTCTAATTATA
*
7722 ATTTCATTACATATATAATTTATAAATATTATTTCCTAATTATA
1 ATTTCATTACATATATAATTTATAAATATTATTTTCTAATTATA
7766 ATT
1 ATT
7769 ATATCATTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
42 21 0.28
43 18 0.24
44 35 0.47
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.52
Consensus pattern (44 bp):
ATTTCATTACATATATAATTTATAAATATTATTTTCTAATTATA
Found at i:7772 original size:35 final size:35
Alignment explanation
Indices: 7733--7803 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
7723 TTTCATTACA
7733 TATATAATTTATAAATATTATTTCCTAATTATAAT
1 TATATAATTTATAAATATTATTTCCTAATTATAAT
* * * *
7768 TATATCATTTCTAAATATTATTTTCTCATTATAAT
1 TATATAATTTATAAATATTATTTCCTAATTATAAT
7803 T
1 T
7804 TCTTATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (35 bp):
TATATAATTTATAAATATTATTTCCTAATTATAAT
Found at i:10966 original size:21 final size:21
Alignment explanation
Indices: 10940--10980 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10930 TTGAAGCCCT
10940 ATTGGATAC-AAGTGGTACTAA
1 ATTGGAT-CTAAGTGGTACTAA
10961 ATTGGATCTAAGTGGTACTA
1 ATTGGATCTAAGTGGTACTA
10981 GGGTTTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (21 bp):
ATTGGATCTAAGTGGTACTAA
Found at i:12093 original size:33 final size:33
Alignment explanation
Indices: 12051--12114 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
12041 CCTAATTTGA
*
12051 GTGTTGTTTGTGATGACACTAAA-TCTGTTTTAG
1 GTGTTGTTTGTGATGA-ACCAAATTCTGTTTTAG
12084 GTGTTGTTTGTGATGAACCAAATTCTGTTTT
1 GTGTTGTTTGTGATGAACCAAATTCTGTTTT
12115 GGATGCTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 5 0.17
33 24 0.83
ACGTcount: A:0.20, C:0.09, G:0.23, T:0.47
Consensus pattern (33 bp):
GTGTTGTTTGTGATGAACCAAATTCTGTTTTAG
Found at i:16476 original size:33 final size:33
Alignment explanation
Indices: 16432--16592 Score: 250
Period size: 33 Copynumber: 4.9 Consensus size: 33
16422 AAAAAAGCCA
* * *
16432 AAATAGTGGCGTTTCTTGTATGGAAACGACACT
1 AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
16465 AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
1 AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
* *
16498 AAATAGCGGCGTTTCTTGTACGGAAGCCCCACT
1 AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
** *
16531 AAATAATGGCGTTTCTTGTATGGAAACGCCACT
1 AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
16564 AAATAGCGGCGTTTCTTGTACGGAAACGC
1 AAATAGCGGCGTTTCTTGTACGGAAACGC
16593 TGCTATTCCC
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 115 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (33 bp):
AAATAGCGGCGTTTCTTGTACGGAAACGCCACT
Found at i:18979 original size:21 final size:21
Alignment explanation
Indices: 18955--18996 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
18945 TCACAAAGAA
18955 GTTTCAAGCTCATTAGAGTTG
1 GTTTCAAGCTCATTAGAGTTG
*
18976 GTTTCAAGCTCATTGGAGTTG
1 GTTTCAAGCTCATTAGAGTTG
18997 CCTAAGGTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.38
Consensus pattern (21 bp):
GTTTCAAGCTCATTAGAGTTG
Found at i:21579 original size:8 final size:8
Alignment explanation
Indices: 21566--21591 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
21556 AAATTCTCTC
21566 AACTTCTA
1 AACTTCTA
21574 AACTTCTA
1 AACTTCTA
21582 AACTTCTA
1 AACTTCTA
21590 AA
1 AA
21592 TTTCGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (8 bp):
AACTTCTA
Found at i:21666 original size:21 final size:21
Alignment explanation
Indices: 21640--21683 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
21630 GGAAATGGAC
21640 GATAACGAGCCATCGACGCCA
1 GATAACGAGCCATCGACGCCA
* *
21661 GATAACGAGTCATCGATGCCA
1 GATAACGAGCCATCGACGCCA
21682 GA
1 GA
21684 CACGGTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.27, G:0.25, T:0.14
Consensus pattern (21 bp):
GATAACGAGCCATCGACGCCA
Found at i:21909 original size:33 final size:33
Alignment explanation
Indices: 21872--21950 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
21862 GTCGTGATCT
21872 GGTCGCGACCGGATCGTGGCTGAGCCACGGACA
1 GGTCGCGACCGGATCGTGGCTGAGCCACGGACA
21905 GGTCGCGACCGGATCGTGGCTGAGCCACGGACA
1 GGTCGCGACCGGATCGTGGCTGAGCCACGGACA
21938 GGTCGCGGACCGG
1 GGTCGC-GACCGG
21951 TCACGACCGG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 39 0.87
34 6 0.13
ACGTcount: A:0.16, C:0.30, G:0.42, T:0.11
Consensus pattern (33 bp):
GGTCGCGACCGGATCGTGGCTGAGCCACGGACA
Found at i:23702 original size:17 final size:18
Alignment explanation
Indices: 23674--23708 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
23664 TACTTTGATT
23674 ATTTGTTATTATTATTAG
1 ATTTGTTATTATTATTAG
23692 ATTTG-TATTATTATTAG
1 ATTTGTTATTATTATTAG
23709 TATTAGTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (18 bp):
ATTTGTTATTATTATTAG
Found at i:26940 original size:37 final size:35
Alignment explanation
Indices: 26865--27022 Score: 155
Period size: 37 Copynumber: 4.5 Consensus size: 35
26855 TGAAAATGAC
* *
26865 GGGAACTTTCCCTAAATTGAAAA-CTAAAACCT-GAT
1 GGGAACTTTCCC-AATTTGAAAATTTAAAA-CTGGAT
26900 GGGAACTTTCCCAATTTGAAAATTTTGAAAACTGGAT
1 GGGAACTTTCCCAATTTGAAAA-TTT-AAAACTGGAT
* *
26937 GGGAACTTTCCCAATTT-CAAACTT-AAACTTGG-T
1 GGGAACTTTCCCAATTTGAAAATTTAAAAC-TGGAT
* * *
26970 GGGAACATTCCCAATTTGACAATTTTTAAAACCGGAT
1 GGGAACTTTCCCAATTTGA-AA-ATTTAAAACTGGAT
27007 GGGAACTTTCCCAATT
1 GGGAACTTTCCCAATT
27023 CAAAGACTGG
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
33 21 0.20
34 12 0.12
35 16 0.16
36 10 0.10
37 44 0.43
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (35 bp):
GGGAACTTTCCCAATTTGAAAATTTAAAACTGGAT
Found at i:26981 original size:70 final size:70
Alignment explanation
Indices: 26865--27026 Score: 218
Period size: 70 Copynumber: 2.3 Consensus size: 70
26855 TGAAAATGAC
** *
26865 GGGAACTTTCCCTAAATTGAAAACTAAAACCTGATGGGAACTTTCCCAATTTGAAAATTTTGAAA
1 GGGAACTTTCCC--AATTTCAAACTAAAACCTGATGGGAACATTCCCAATTTGAAAATTTTGAAA
*
26930 ACTGGAT
64 ACCGGAT
* * * * *
26937 GGGAACTTTCCCAATTTCAAACTTAAACTTGGTGGGAACATTCCCAATTTGACAATTTTTAAAAC
1 GGGAACTTTCCCAATTTCAAACTAAAACCTGATGGGAACATTCCCAATTTGAAAATTTTGAAAAC
27002 CGGAT
66 CGGAT
27007 GGGAACTTTCCCAA-TTCAAA
1 GGGAACTTTCCCAATTTCAAA
27027 GACTGGCTAA
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
69 6 0.07
70 63 0.78
72 12 0.15
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (70 bp):
GGGAACTTTCCCAATTTCAAACTAAAACCTGATGGGAACATTCCCAATTTGAAAATTTTGAAAAC
CGGAT
Found at i:27156 original size:52 final size:51
Alignment explanation
Indices: 27004--27156 Score: 130
Period size: 53 Copynumber: 2.9 Consensus size: 51
26994 TTTAAAACCG
* * * * *
27004 GATGGGAACTTTCCCAA-TTCAAAGACTG-GCTAAATTGAATAGTTTGAAAATT
1 GATGGGAACTTTCCCAACTTGAAA-A-AGAGCT-AGTTGAATACTTTGAAAACT
* * * *
27056 GATGGGAACTTTTCCAATTTGAAAAAGAGCTAGATGCAATAATTTTGAAAACT
1 GATGGGAACTTTCCCAACTTGAAAAAGAGCTAGTTG-AAT-ACTTTGAAAACT
* * *
27109 GATGGGAACTTTCCCGACTTGAAAAGGAGTTAAGTTGAATACTTTGAA
1 GATGGGAACTTTCCCAACTTGAAAAAGAGCT-AGTTGAATACTTTGAA
27157 GACTTCAGTG
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
51 4 0.05
52 30 0.37
53 44 0.54
54 4 0.05
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (51 bp):
GATGGGAACTTTCCCAACTTGAAAAAGAGCTAGTTGAATACTTTGAAAACT
Found at i:27203 original size:18 final size:18
Alignment explanation
Indices: 27179--27214 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27169 ATTCTTTTTG
27179 ATTTTTTT-GATTTCTGA
1 ATTTTTTTGGATTTCTGA
*
27196 ATTTTTTTGGATTTTTGA
1 ATTTTTTTGGATTTCTGA
27214 A
1 A
27215 AACCTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.03, G:0.14, T:0.64
Consensus pattern (18 bp):
ATTTTTTTGGATTTCTGA
Found at i:27666 original size:18 final size:19
Alignment explanation
Indices: 27643--27685 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
27633 AATATTTAAT
27643 AACATTT-AAAGAAATATA
1 AACATTTAAAAGAAATATA
*
27661 AACATTTAAAAAGAACTATA
1 AACATTT-AAAAGAAATATA
27681 AACAT
1 AACAT
27686 GGATGCAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
20 15 0.68
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (19 bp):
AACATTTAAAAGAAATATA
Found at i:31144 original size:33 final size:33
Alignment explanation
Indices: 31100--31171 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
31090 GATGCTTGCT
31100 GAGCTAAGTCATCAAGAAAGCTAAGCCAAGGGA
1 GAGCTAAGTCATCAAGAAAGCTAAGCCAAGGGA
* *
31133 GAGCTAGGTCATCAAGAAAGTTAAGCCAAGGGA
1 GAGCTAAGTCATCAAGAAAGCTAAGCCAAGGGA
*
31166 AAGCTA
1 GAGCTA
31172 TATTTTGGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.14
Consensus pattern (33 bp):
GAGCTAAGTCATCAAGAAAGCTAAGCCAAGGGA
Found at i:31765 original size:17 final size:18
Alignment explanation
Indices: 31743--31776 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
31733 TAAGATGTAA
31743 GAATGAATGAC-CTAAAT
1 GAATGAATGACTCTAAAT
*
31760 GAATGACTGACTCTAAA
1 GAATGAATGACTCTAAA
31777 ATGCAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.24
Consensus pattern (18 bp):
GAATGAATGACTCTAAAT
Found at i:32229 original size:33 final size:33
Alignment explanation
Indices: 32067--32263 Score: 213
Period size: 34 Copynumber: 6.0 Consensus size: 33
32057 GAAGTTGAAG
* * * *
32067 AAGACCAGTCTGTGGTCG-ATGT-AAACTAAGA
1 AAGACCTGTCTGAGGTCGAATTTAAAACTGAGA
* *
32098 AAGACCTGTCCGAGGTTGAATTTAAAAACTGAGA
1 AAGACCTGTCTGAGGTCGAATTT-AAAACTGAGA
* * *
32132 AAGACCTATCTGAGGTCGAATTTGAAA--GATA
1 AAGACCTGTCTGAGGTCGAATTTAAAACTGAGA
*
32163 AAGACCTGTCCGAGGTCGAATTTAAAAACTGAGA
1 AAGACCTGTCTGAGGTCGAATTT-AAAACTGAGA
* *
32197 AAGACCTGTCTGAGGTTGAAATTAAAACTGAGA
1 AAGACCTGTCTGAGGTCGAATTTAAAACTGAGA
* * *
32230 AAGTCTTGTCTGAGGTCGAAATTAAAACTGAGA
1 AAGACCTGTCTGAGGTCGAATTTAAAACTGAGA
32263 A
1 A
32264 GGGATGACCT
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
31 38 0.27
32 6 0.04
33 44 0.32
34 51 0.37
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (33 bp):
AAGACCTGTCTGAGGTCGAATTTAAAACTGAGA
Found at i:32614 original size:39 final size:39
Alignment explanation
Indices: 32266--32606 Score: 556
Period size: 39 Copynumber: 8.7 Consensus size: 39
32256 ACTGAGAAGG
* * * **
32266 GATGACCTGTTTCCAGTCAACCTTGGTAACTATTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
*
32305 GATGACCTATTTCCAGTCAACTTTGATAAATGCTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
*
32344 GATGACCTATTTCCAGTCAACTTTGATAAATGCTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
* *
32383 GATGACCTGTTTCCAGTCAATTTTGATAAATGCTGAAAT
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
32422 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
*
32461 GATGACCTGGTTCCAGTCAACTTTGATAAATGCTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
* *
32500 GATGACCTGTTTCCAGTCAATTTTGATAAATGTTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
*
32539 GATGACCTGTTTCTAGTCAACTTTGATAAATGCTGAAAA
1 GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
*
32578 GATGACCTGTTTCCAGTCAATTTTGATAA
1 GATGACCTGTTTCCAGTCAACTTTGATAA
32607 CTACTGAAGA
Statistics
Matches: 282, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 282 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (39 bp):
GATGACCTGTTTCCAGTCAACTTTGATAAATGCTGAAAA
Found at i:32686 original size:56 final size:56
Alignment explanation
Indices: 32611--32797 Score: 313
Period size: 56 Copynumber: 3.3 Consensus size: 56
32601 TGATAACTAC
* * * * *
32611 TGAAGAATTCAAATTGAAGAAA-AGCCACCCTGGATCGTTGACGTAAATTGATGCAT
1 TGAATAATTGAAAATGAAGAAAGA-CCACACTGGATCGTTGAAGTAAATTGATGCAT
32667 TGAATAATTGAAAATGAAGAAAGACCACACTGGATCGTTGAAGTAAATTGATGCAT
1 TGAATAATTGAAAATGAAGAAAGACCACACTGGATCGTTGAAGTAAATTGATGCAT
32723 TGAATAATTGAAAATGAAGAAAGACCACACTGGATCGTTGAAGTAAATTGATGCAT
1 TGAATAATTGAAAATGAAGAAAGACCACACTGGATCGTTGAAGTAAATTGATGCAT
32779 TGAATAATTGAAAATGAAG
1 TGAATAATTGAAAATGAAG
32798 GATTGAAATT
Statistics
Matches: 125, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
56 124 0.99
57 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.25
Consensus pattern (56 bp):
TGAATAATTGAAAATGAAGAAAGACCACACTGGATCGTTGAAGTAAATTGATGCAT
Found at i:32764 original size:30 final size:30
Alignment explanation
Indices: 32674--32764 Score: 73
Period size: 30 Copynumber: 3.2 Consensus size: 30
32664 CATTGAATAA
32674 TTGAAAATGAAGAAAGACCACACTGGATCG
1 TTGAAAATGAAGAAAGACCACACTGGATCG
* ** ** * * **
32704 TTG-AAGT-AA-ATTGA-TGCATTGAATAA
1 TTGAAAATGAAGAAAGACCACACTGGATCG
32730 TTGAAAATGAAGAAAGACCACACTGGATCG
1 TTGAAAATGAAGAAAGACCACACTGGATCG
32760 TTGAA
1 TTGAA
32765 GTAAATTGAT
Statistics
Matches: 39, Mismatches: 18, Indels: 8
0.60 0.28 0.12
Matches are distributed among these distances:
26 9 0.23
27 6 0.15
28 4 0.10
29 6 0.15
30 14 0.36
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (30 bp):
TTGAAAATGAAGAAAGACCACACTGGATCG
Found at i:32802 original size:22 final size:23
Alignment explanation
Indices: 32777--32827 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
32767 AAATTGATGC
32777 ATTGAATAATTGAA-AATGAAGG
1 ATTGAATAATTGAACAATGAAGG
*
32799 ATTG-A-AATTGAACCATTGAAGG
1 ATTGAATAATTGAA-CAATGAAGG
32821 ATTGAAT
1 ATTGAAT
32828 TTGAAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 15 0.62
23 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (23 bp):
ATTGAATAATTGAACAATGAAGG
Found at i:32816 original size:36 final size:36
Alignment explanation
Indices: 32767--33172 Score: 271
Period size: 36 Copynumber: 11.2 Consensus size: 36
32757 TCGTTGAAGT
* * * *
32767 AAATTGATGCATTGAATAATTGAAAATGAAGGATTG
1 AAATTGAAGCATTGAAGAATTGAAATTGAAGAATTG
* * *
32803 AAATTGAACCATTGAAGGATTGAATTTGAAGAATTG
1 AAATTGAAGCATTGAAGAATTGAAATTGAAGAATTG
32839 AAATTGAAGCATTGAA-ATATTGAAATTGAAGAATTG
1 AAATTGAAGCATTGAAGA-ATTGAAATTGAAGAATTG
*
32875 AAATATTGAA--ATTGAAGAATTGAAATTGAA-ACGTTG
1 -AA-ATTGAAGCATTGAAGAATTGAAATTGAAGA-ATTG
*
32911 AAGAATTGAA--TTTGAAAAAGGAAATTGAAGCATTGAA-ATATTG
1 -A-AATTGAAGCATTG---AA-G-AATTGAA--ATTGAAGA-ATTG
* * * **
32954 AAATTGAAACCTTGAAGAATTGAATTTGAAGAAAGG
1 AAATTGAAGCATTGAAGAATTGAAATTGAAGAATTG
*
32990 TAATTGAAGCATTG-A-AA-T---ATTG-A-AATTG
1 AAATTGAAGCATTGAAGAATTGAAATTGAAGAATTG
33018 AAATTGAAGCATTGAA-ATATTGAAATTGAAGAATATTG
1 AAATTGAAGCATTGAAGA-ATTGAAATTGAAG-A-ATTG
* * *
33056 AAATTGAAACGTTGAAGGATT-AAATTTGAAGAATTG
1 AAATTGAAGCATTGAAGAATTGAAA-TTGAAGAATTG
*
33092 AAATTGTAGCATTGAA-ATATTGAAATTGAAGAATTG
1 AAATTGAAGCATTGAAGA-ATTGAAATTGAAGAATTG
33128 AAATATTGAA--ATTG-A-AATTGAAACCTTGAAGAATTG
1 -AA-ATTGAAGCATTGAAGAATTGAAA--TTGAAGAATTG
*
33164 AATTTGAAG
1 AAATTGAAG
33173 AAAGGAAATT
Statistics
Matches: 301, Mismatches: 34, Indels: 71
0.74 0.08 0.17
Matches are distributed among these distances:
28 16 0.05
29 3 0.01
30 4 0.01
31 1 0.00
33 1 0.00
34 18 0.06
35 7 0.02
36 157 0.52
37 15 0.05
38 45 0.15
39 3 0.01
40 3 0.01
41 14 0.05
42 1 0.00
43 13 0.04
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (36 bp):
AAATTGAAGCATTGAAGAATTGAAATTGAAGAATTG
Found at i:32831 original size:14 final size:14
Alignment explanation
Indices: 32813--33195 Score: 166
Period size: 14 Copynumber: 27.1 Consensus size: 14
32803 AAATTGAACC
*
32813 ATTGAAGGATTGAA
1 ATTGAAGAATTGAA
*
32827 TTTGAAGAATTGAA
1 ATTGAAGAATTGAA
*
32841 ATTGAAGCATTGAAA
1 ATTGAAGAATTG-AA
32856 TATTG-A-AATTGAAGA
1 -ATTGAAGAATTG-A-A
32871 ATTGAA-ATATTGAA
1 ATTGAAGA-ATTGAA
32885 ATTGAAGAATTGAA
1 ATTGAAGAATTGAA
*
32899 ATTG-A-AA-CG--
1 ATTGAAGAATTGAA
32908 -TTGAAGAATTGAA
1 ATTGAAGAATTGAA
* **
32921 TTTGAA-AAAGGAA
1 ATTGAAGAATTGAA
*
32934 ATTGAAGCATTGAAA
1 ATTGAAGAATTG-AA
32949 TATTG-A-AATTGAA
1 -ATTGAAGAATTGAA
32962 ACCTTGAAGAATTGAA
1 A--TTGAAGAATTGAA
* ** *
32978 TTTGAAGAAAGGTA
1 ATTGAAGAATTGAA
*
32992 ATTGAAGCATTGAAA
1 ATTGAAGAATTG-AA
33007 TATTG-A-AATTGAA
1 -ATTGAAGAATTGAA
*
33020 ATTGAAGCATTGAAA
1 ATTGAAGAATTG-AA
33035 TATTG-A-AATTGAAGAA
1 -ATTGAAGAATT---GAA
33051 TATTG-A-AATTGAA
1 -ATTGAAGAATTGAA
*
33064 ACGTTGAAGGATT-AA
1 A--TTGAAGAATTGAA
33079 ATTTGAAGAATTGAA
1 A-TTGAAGAATTGAA
* *
33094 ATTGTAGCATTGAAA
1 ATTGAAGAATTG-AA
33109 TATTG-A-AATTGAAGA
1 -ATTGAAGAATTG-A-A
33124 ATTGAA-ATATTGAA
1 ATTGAAGA-ATTGAA
33138 ATTG-A-AATTGAA
1 ATTGAAGAATTGAA
33150 ACCTTGAAGAATTGAA
1 A--TTGAAGAATTGAA
* **
33166 TTTGAAGAAAGGAA
1 ATTGAAGAATTGAA
*
33180 ATTGAAGCATTGAA
1 ATTGAAGAATTGAA
33194 AT
1 AT
33196 ATTGAAATTG
Statistics
Matches: 288, Mismatches: 39, Indels: 84
0.70 0.09 0.20
Matches are distributed among these distances:
8 3 0.01
9 1 0.00
10 2 0.01
11 2 0.01
12 15 0.05
13 21 0.07
14 154 0.53
15 32 0.11
16 57 0.20
17 1 0.00
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.30
Consensus pattern (14 bp):
ATTGAAGAATTGAA
Found at i:32838 original size:22 final size:22
Alignment explanation
Indices: 32784--32840 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
32774 TGCATTGAAT
32784 AATTGAA-AA-TGAAGGATTGA
1 AATTGAACAATTGAAGGATTGA
*
32804 AATTGAACCATTGAAGGATTGA
1 AATTGAACAATTGAAGGATTGA
* *
32826 ATTTGAAGAATTGAA
1 AATTGAACAATTGAA
32841 ATTGAAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.23
21 1 0.03
22 23 0.74
ACGTcount: A:0.46, C:0.04, G:0.23, T:0.28
Consensus pattern (22 bp):
AATTGAACAATTGAAGGATTGA
Found at i:32853 original size:22 final size:21
Alignment explanation
Indices: 32828--33208 Score: 126
Period size: 22 Copynumber: 17.9 Consensus size: 21
32818 AGGATTGAAT
32828 TTGAAGAATTGAAATTGAAGCA
1 TTGAA-AATTGAAATTGAAGCA
*
32850 TTGAAATATTGAAATTGAAGAA
1 TTGAAA-ATTGAAATTGAAGCA
*
32872 TTGAAATATTGAAATTGAAGAA
1 TTGAAA-ATTGAAATTGAAGCA
*
32894 TTG-AAATTGAAACGTTGAAGAA
1 TTGAAAATTGAAA--TTGAAGCA
* **
32916 TTG-AATTTGAAAAAGGAA--A
1 TTGAAAATTG-AAATTGAAGCA
*
32935 TTGAAGCATTGAAATATTGAA--A
1 TTGAA-AATTG-AA-ATTGAAGCA
* *
32957 TTGAAACCTTGAAGAATTGAA--T
1 TTGAAA-ATTG-A-AATTGAAGCA
** *
32979 TTGAAGAAAGGTAATTGAAGCA
1 TTGAA-AATTGAAATTGAAGCA
33001 TTGAAATATTGAAATTGAA--A
1 TTGAAA-ATTGAAATTGAAGCA
*
33021 TTGAAGCATTGAAATATTGAA--A
1 TTGAA-AATTG-AA-ATTGAAGCA
* *
33043 TTGAAGAATATTGAAATTGAAACG
1 TTG-A-AA-ATTGAAATTGAAGCA
*
33067 TTGAAGGATT-AAA-T------
1 TTGAA-AATTGAAATTGAAGCA
*
33081 TTGAAGAATTGAAATTGTAGCA
1 TTGAA-AATTGAAATTGAAGCA
* *
33103 TTGAAATATTGAAATTGAAGAA
1 TTG-AAAATTGAAATTGAAGCA
33125 TTGAAATATTGAAATTGAA--A
1 TTGAAA-ATTGAAATTGAAGCA
* *
33145 TTGAAACCTTGAAGAATTGAA--T
1 TTGAAA-ATTG-A-AATTGAAGCA
**
33167 TTGAAGAAAGGAAATTGAAGCA
1 TTGAA-AATTGAAATTGAAGCA
33189 TTGAAATATTGAAATTGAAG
1 TTGAAA-ATTGAAATTGAAG
33209 AAAGGCCACC
Statistics
Matches: 284, Mismatches: 37, Indels: 76
0.72 0.09 0.19
Matches are distributed among these distances:
14 9 0.03
15 3 0.01
16 1 0.00
19 4 0.01
20 43 0.15
21 23 0.08
22 181 0.64
23 12 0.04
24 8 0.03
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.30
Consensus pattern (21 bp):
TTGAAAATTGAAATTGAAGCA
Found at i:33005 original size:8 final size:6
Alignment explanation
Indices: 33000--33150 Score: 67
Period size: 6 Copynumber: 22.2 Consensus size: 6
32990 TAATTGAAGC
33000 ATTGAA ATATTGAA ATTGAA ATTGAA GCATTGAAA TATTGAA ATTG-A
1 ATTGAA AT--TGAA ATTGAA ATTGAA --ATTG-AA -ATTGAA ATTGAA
33047 A--GAA TATTGAA ATTGAA ACGTTGAA GGATT-AA ATTTGAAGA ATTGAA
1 ATTGAA -ATTGAA ATTGAA A--TTGAA --ATTGAA A-TTG-A-A ATTGAA
*
33094 ATTGTAGC ATTGAAA TATTGAA ATTGAAGA ATTGAAA TATTGAA ATTGAA
1 ATTG-A-A ATTG-AA -ATTGAA ATTG-A-A ATTG-AA -ATTGAA ATTGAA
33144 ATTGAA A
1 ATTGAA A
33151 CCTTGAAGAA
Statistics
Matches: 118, Mismatches: 4, Indels: 46
0.70 0.02 0.27
Matches are distributed among these distances:
3 1 0.01
4 1 0.01
5 4 0.03
6 47 0.40
7 15 0.13
8 45 0.38
9 4 0.03
10 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.32
Consensus pattern (6 bp):
ATTGAA
Found at i:33164 original size:8 final size:7
Alignment explanation
Indices: 32777--33165 Score: 127
Period size: 8 Copynumber: 53.9 Consensus size: 7
32767 AAATTGATGC
32777 ATTGAATA
1 ATTGAA-A
32785 ATTGAAA
1 ATTGAAA
*
32792 A-TGAAGG
1 ATTGAA-A
32799 ATTG-AA
1 ATTGAAA
*
32805 ATTGAACC
1 ATTGAA-A
*
32813 ATTGAAGG
1 ATTGAA-A
32821 ATTG-AA
1 ATTGAAA
*
32827 TTTGAAGA
1 ATTGAA-A
32835 ATTG-AA
1 ATTGAAA
*
32841 ATTGAAGC
1 ATTGAA-A
32849 ATTGAAA
1 ATTGAAA
32856 TATTG-AA
1 -ATTGAAA
32863 ATTGAAGA
1 ATTGAA-A
32871 ATTGAAA
1 ATTGAAA
32878 TATTG-AA
1 -ATTGAAA
32885 ATTGAAGA
1 ATTGAA-A
32893 ATTG-AA
1 ATTGAAA
32899 ATTGAAA
1 ATTGAAA
*
32906 CGTTGAAGA
1 -ATTGAA-A
32915 ATTG-AA
1 ATTGAAA
*
32921 TTTGAAA
1 ATTGAAA
* *
32928 A-AGGAA
1 ATTGAAA
*
32934 ATTGAAGC
1 ATTGAA-A
32942 ATTGAAA
1 ATTGAAA
32949 TATTG-AA
1 -ATTGAAA
32956 ATTGAAA
1 ATTGAAA
*
32963 CCTTGAAGA
1 -ATTGAA-A
32972 ATTG-AA
1 ATTGAAA
*
32978 TTTGAAGA
1 ATTGAA-A
* **
32986 A-AGGTA
1 ATTGAAA
*
32992 ATTGAAGC
1 ATTGAA-A
33000 ATTGAAA
1 ATTGAAA
33007 TATTG-AA
1 -ATTGAAA
33014 ATTG-AA
1 ATTGAAA
*
33020 ATTGAAGC
1 ATTGAA-A
33028 ATTGAAA
1 ATTGAAA
33035 TATTG-AA
1 -ATTGAAA
33042 ATTGAAGAA
1 ATTG-A-AA
33051 TATTG-AA
1 -ATTGAAA
33058 ATTGAAA
1 ATTGAAA
* *
33065 CGTTGAAGG
1 -ATTGAA-A
33074 ATT-AAA
1 ATTGAAA
*
33080 TTTGAAGA
1 ATTGAA-A
33088 ATTG-AA
1 ATTGAAA
**
33094 ATTGTAGC
1 ATTG-AAA
33102 ATTGAAA
1 ATTGAAA
33109 TATTG-AA
1 -ATTGAAA
33116 ATTGAAGA
1 ATTGAA-A
33124 ATTGAAA
1 ATTGAAA
33131 TATTG-AA
1 -ATTGAAA
33138 ATTG-AA
1 ATTGAAA
33144 ATTGAAA
1 ATTGAAA
*
33151 CCTTGAAGA
1 -ATTGAA-A
33160 ATTGAA
1 ATTGAA
33166 TTTGAAGAAA
Statistics
Matches: 285, Mismatches: 46, Indels: 100
0.66 0.11 0.23
Matches are distributed among these distances:
6 86 0.30
7 55 0.19
8 135 0.47
9 5 0.02
10 4 0.01
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.30
Consensus pattern (7 bp):
ATTGAAA
Found at i:33181 original size:36 final size:36
Alignment explanation
Indices: 33141--33213 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
33131 TATTGAAATT
* *
33141 GAAATTGAAACCTTGAAGA-ATTGAATTTGAAGAAAG
1 GAAATTGAAACATTGAA-ATATTGAAATTGAAGAAAG
*
33177 GAAATTGAAGCATTGAAATATTGAAATTGAAGAAAG
1 GAAATTGAAACATTGAAATATTGAAATTGAAGAAAG
33213 G
1 G
33214 CCACCCCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.48, C:0.04, G:0.23, T:0.25
Consensus pattern (36 bp):
GAAATTGAAACATTGAAATATTGAAATTGAAGAAAG
Found at i:33208 original size:86 final size:86
Alignment explanation
Indices: 33052--33210 Score: 264
Period size: 86 Copynumber: 1.8 Consensus size: 86
33042 ATTGAAGAAT
* * ** *
33052 ATTGAAATTGAAACGTTGAAGGATTAAATTTGAAGAATTGAAATTGTAGCATTGAAATATTGAAA
1 ATTGAAATTGAAACCTTGAAGAATTAAATTTGAAGAAAGGAAATTGAAGCATTGAAATATTGAAA
33117 TTGAAGAATTGAAATATTGAA
66 TTGAAGAATTGAAATATTGAA
*
33138 ATTGAAATTGAAACCTTGAAGAATTGAATTTGAAGAAAGGAAATTGAAGCATTGAAATATTGAAA
1 ATTGAAATTGAAACCTTGAAGAATTAAATTTGAAGAAAGGAAATTGAAGCATTGAAATATTGAAA
33203 TTGAAGAA
66 TTGAAGAA
33211 AGGCCACCCC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 67 1.00
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.30
Consensus pattern (86 bp):
ATTGAAATTGAAACCTTGAAGAATTAAATTTGAAGAAAGGAAATTGAAGCATTGAAATATTGAAA
TTGAAGAATTGAAATATTGAA
Found at i:33364 original size:96 final size:96
Alignment explanation
Indices: 33242--33895 Score: 963
Period size: 96 Copynumber: 6.8 Consensus size: 96
33232 CAATAAATTG
* * * * *
33242 AAGAAAGACCACCCAGGGTC-A-TTGAAGAAAGATGGCTCTGGATCGATTGAAGTAGACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
*
33305 ATGATCACCTTGAATAAATTGAGACTAACTA
66 ATGATCACCTTGGATAAATTGAGACTAACTA
* *
33336 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGAATTGATTGAAGTAAACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
* *
33401 ATGATCGCCTTGGATAAATTGAGACTAACTG
66 ATGATCACCTTGGATAAATTGAGACTAACTA
33432 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGA-CTGATTGAAGTAAACTGAAG
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATC-GATTGAAGTAAACTGAAG
* *
33496 AATGATCGCCTTGGATAAATTGAGACTAACTG
65 AATGATCACCTTGGATAAATTGAGACTAACTA
* *
33528 AAGAAAGACCGCCTTGGGTCAACTTGAAGCAAGATCGCTCTGGATTGATTGAAGTAAACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
*
33593 ATGATCACCCTGGATAAATTGAGACTAACTA
66 ATGATCACCTTGGATAAATTGAGACTAACTA
* * * *
33624 AAGAAATACCGCCCTGGGTCAACTTGAAGCAAGATCGCCCTGGATCAATCGAAGTAAACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
* *
33689 ATGTTCACCCTGGATAAATTGAGACTAACTA
66 ATGATCACCTTGGATAAATTGAGACTAACTA
* * * * * *
33720 AAGAAATACCGCCCTGGGTTAACTTGAAGCAAGATTGCCCTGGATCAATCGAAGTAAACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
33785 ATGATCACCTTGGATAAATTGAGACTAACTA
66 ATGATCACCTTGGATAAATTGAGACTAACTA
* * * * * **
33816 AAGAAATACTGCCCTGGGTCAACTTGAAGCAAGATTGCCCTGGATCAATCAAAGTAAACTGAAGA
1 AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
*
33881 ATGATCACCCTGGAT
66 ATGATCACCTTGGAT
33896 CAACTGAATT
Statistics
Matches: 524, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
94 18 0.03
95 1 0.00
96 505 0.96
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (96 bp):
AAGAAAGACCGCCCTGGGTCAACTTGAAGCAAGATCGCTCTGGATCGATTGAAGTAAACTGAAGA
ATGATCACCTTGGATAAATTGAGACTAACTA
Found at i:35136 original size:21 final size:22
Alignment explanation
Indices: 35074--35131 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
35064 CTCTAAAAAC
* *
35074 CTTTTTGAGAAAAAC-ATTTTTT
1 CTTTTTGA-AAAATCAATTTCTT
35096 CTTTTTGAAAAATCAATTTCTT
1 CTTTTTGAAAAATCAATTTCTT
*
35118 CTTTTTGAACAATC
1 CTTTTTGAAAAATC
35132 CTTTCACCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 5 0.16
22 27 0.84
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (22 bp):
CTTTTTGAAAAATCAATTTCTT
Found at i:35761 original size:7 final size:7
Alignment explanation
Indices: 35749--35790 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
35739 TGCAATTCAA
35749 TTTCTTT
1 TTTCTTT
35756 TTTCTTT
1 TTTCTTT
*
35763 TTTCTCT
1 TTTCTTT
35770 TTTCTTT
1 TTTCTTT
*
35777 TTTTTTCT
1 TTTCTT-T
35785 TTTCTT
1 TTTCTT
35791 CTGGGAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTCTTT
Found at i:35778 original size:15 final size:15
Alignment explanation
Indices: 35749--35790 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
35739 TGCAATTCAA
*
35749 TTTCTTTTTTC-TTT
1 TTTCTCTTTTCTTTT
35763 TTTCTCTTTTCTTTT
1 TTTCTCTTTTCTTTT
*
35778 TTTTTCTTTTCTT
1 TTTCTCTTTTCTT
35791 CTGGGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTCTTTTCTTTT
Found at i:36263 original size:48 final size:48
Alignment explanation
Indices: 36193--36288 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
36183 TTATCTTATC
*
36193 TTTTTGTTCAAAACACAATTGTTTATTCAAAAGAATCTAGTTTATCTT
1 TTTTTCTTCAAAACACAATTGTTTATTCAAAAGAATCTAGTTTATCTT
* * *
36241 TTTTTCTTCAAAGCACATTTGTTTATTTAAAAGAATCTAGTTTATCTT
1 TTTTTCTTCAAAACACAATTGTTTATTCAAAAGAATCTAGTTTATCTT
36289 ATTCAGACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.48
Consensus pattern (48 bp):
TTTTTCTTCAAAACACAATTGTTTATTCAAAAGAATCTAGTTTATCTT
Found at i:38645 original size:36 final size:37
Alignment explanation
Indices: 38446--38685 Score: 251
Period size: 37 Copynumber: 6.5 Consensus size: 37
38436 AAATGCTTTT
* *
38446 GATGGGAACTTTCCCACTTTGAAAACTAAAACTGAAAA-T-
1 GATGGGAACTTTCCCAATTTGAAAACT----TTGAAAACTA
* *
38485 GACGGGAACTTTCCCTAAATTGAAAAC--T-AAAACCT-
1 GATGGGAACTTTCCC-AATTTGAAAACTTTGAAAA-CTA
*
38520 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAAGTA
1 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAACTA
*
38557 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAAGTA
1 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAACTA
* *
38594 GATGGGAACTTTCCCAATTTGAAAAC-TTAAAAACTT
1 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAACTA
* * * * **
38630 GGTGGGAACTATCCCAATTTGACAATTTTGAAAACCG
1 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAACTA
38667 GATGGGAACTTTCCCAATT
1 GATGGGAACTTTCCCAATT
38686 CGAAGACTGG
Statistics
Matches: 175, Mismatches: 18, Indels: 18
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.02
34 11 0.06
35 15 0.09
36 31 0.18
37 91 0.52
39 14 0.08
40 9 0.05
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (37 bp):
GATGGGAACTTTCCCAATTTGAAAACTTTGAAAACTA
Found at i:38671 original size:73 final size:74
Alignment explanation
Indices: 38446--38685 Score: 247
Period size: 73 Copynumber: 3.3 Consensus size: 74
38436 AAATGCTTTT
* ** * * * *
38446 GATGGGAACTTTCCCACTTTGAAAACTAAAACTGAAAAT-GACGGGAACTTTCCCTAAATTGAAA
1 GATGGGAACTTTCCCAATTTGAAAACTTTAA---AAACTAGATGGGAACTATCCC-AATTTGAAA
*
38510 AC--T-AAAACCT
62 ACTTTGAAAACCA
* * *
38520 GATGGGAACTTTCCCAATTTGAAAACTTTGAAAAGTAGATGGGAACTTTCCCAATTTGAAAACTT
1 GATGGGAACTTTCCCAATTTGAAAACTTTAAAAACTAGATGGGAACTATCCCAATTTGAAAACTT
**
38585 TGAAAAGTA
66 TGAAAACCA
* * * *
38594 GATGGGAACTTTCCCAATTTGAAAAC-TTAAAAACTTGGTGGGAACTATCCCAATTTGACAATTT
1 GATGGGAACTTTCCCAATTTGAAAACTTTAAAAACTAGATGGGAACTATCCCAATTTGAAAACTT
*
38658 TGAAAACCG
66 TGAAAACCA
38667 GATGGGAACTTTCCCAATT
1 GATGGGAACTTTCCCAATT
38686 CGAAGACTGG
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
71 14 0.10
72 14 0.10
73 57 0.40
74 57 0.40
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (74 bp):
GATGGGAACTTTCCCAATTTGAAAACTTTAAAAACTAGATGGGAACTATCCCAATTTGAAAACTT
TGAAAACCA
Found at i:38785 original size:53 final size:53
Alignment explanation
Indices: 38667--38816 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 53
38657 TTGAAAACCG
* **
38667 GATGGGAACTTTCCCAATTCGAAGACTG-GCTAAATTGAATAC-TTTGAAAATT
1 GATGGGAACTTTCCCAATTTGAA-AAAGAGCTAAATTGAATACTTTTGAAAATT
* * * *
38719 GATGAGAACTTTCCCAATTTGAAAAAGAGTTAGATGGAATACTTTTGAAAATT
1 GATGGGAACTTTCCCAATTTGAAAAAGAGCTAAATTGAATACTTTTGAAAATT
* *
38772 GATGGGAACTTTCCCGACTTGAAAAAGAGCTAAATTGAATACTTT
1 GATGGGAACTTTCCCAATTTGAAAAAGAGCTAAATTGAATACTTT
38817 GAAGACTTGA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
51 2 0.02
52 32 0.39
53 49 0.59
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (53 bp):
GATGGGAACTTTCCCAATTTGAAAAAGAGCTAAATTGAATACTTTTGAAAATT
Found at i:42086 original size:33 final size:33
Alignment explanation
Indices: 42044--42107 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
42034 CATGCCGAGC
*
42044 GTCATCAAGAAAGCTAAGCCAAGGGAGAGCTGA
1 GTCATCAAGAAAGCTAAGCCAAGGGAAAGCTGA
*
42077 GTCATCAAGAAAGTTAAGCCAAGGGAAAGCT
1 GTCATCAAGAAAGCTAAGCCAAGGGAAAGCT
42108 ATATTTTGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.28, T:0.14
Consensus pattern (33 bp):
GTCATCAAGAAAGCTAAGCCAAGGGAAAGCTGA
Found at i:42679 original size:17 final size:18
Alignment explanation
Indices: 42657--42690 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
42647 TAAGATGTAA
42657 GAATGAATGAC-CTAAAT
1 GAATGAATGACTCTAAAT
*
42674 GAATGACTGACTCTAAA
1 GAATGAATGACTCTAAA
42691 ATGCAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.24
Consensus pattern (18 bp):
GAATGAATGACTCTAAAT
Found at i:44179 original size:16 final size:15
Alignment explanation
Indices: 44152--44195 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
44142 ATTATTGATT
44152 AATTAATAATTAATG
1 AATTAATAATTAATG
*
44167 AATTAACTAATTAATTT
1 AATTAA-TAATTAA-TG
44184 AA-TAATAATTAA
1 AATTAATAATTAA
44196 ACCTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 13 0.50
16 10 0.38
17 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (15 bp):
AATTAATAATTAATG
Found at i:44264 original size:21 final size:22
Alignment explanation
Indices: 44219--44267 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
44209 TCTTCAAATT
44219 TTAATAAAATCATAATTAATAA
1 TTAATAAAATCATAATTAATAA
44241 TTAATAAAA-CAT-ATTAATATA
1 TTAATAAAATCATAATTAATA-A
44262 TTAATA
1 TTAATA
44268 CTTAATAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.27
21 10 0.38
22 9 0.35
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
TTAATAAAATCATAATTAATAA
Found at i:44339 original size:3 final size:3
Alignment explanation
Indices: 44320--44404 Score: 66
Period size: 3 Copynumber: 28.3 Consensus size: 3
44310 TAACTATTTC
* * * *
44320 ATA ATA AT- TTA ATTA ATA ATA ATA ATA ATA ACA TTA ATG ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
44365 ATA ACA TTA CTA CATA ATT A-A ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
44405 CAAGTAGGGC
Statistics
Matches: 63, Mismatches: 15, Indels: 8
0.73 0.17 0.09
Matches are distributed among these distances:
2 2 0.03
3 56 0.89
4 5 0.08
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:44674 original size:42 final size:43
Alignment explanation
Indices: 44615--44737 Score: 194
Period size: 45 Copynumber: 2.8 Consensus size: 43
44605 ATTCTACTTT
44615 ATCTCTAGGTAATTCATCAAAATAAAGCTAATATTA-TACTCC
1 ATCTCTAGGTAATTCATCAAAATAAAGCTAATATTACTACTCC
*
44657 ATCTCTAGGTAATTCATCAAAATAAAGCTAATATTCTACTCCTCC
1 ATCTCTAGGTAATTCATCAAAATAAAGCTAATA-T-TACTACTCC
* *
44702 ATCCCTAGGTAATTCATCAAAATAAACCTAATATTA
1 ATCTCTAGGTAATTCATCAAAATAAAGCTAATATTA
44738 ATTGTTGCTT
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
42 33 0.44
43 3 0.04
44 3 0.04
45 36 0.48
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.33
Consensus pattern (43 bp):
ATCTCTAGGTAATTCATCAAAATAAAGCTAATATTACTACTCC
Found at i:48425 original size:25 final size:24
Alignment explanation
Indices: 48388--48434 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
48378 TTAAAAAATT
48388 TGAAAAACTTTGATGGATGAGATGGA
1 TGAAAAACTTTGAT-GAT-AGATGGA
48414 TGAAAAAC-TTGATGATAGATG
1 TGAAAAACTTTGATGATAGATG
48435 AATAGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 3 0.14
25 5 0.24
26 8 0.38
ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28
Consensus pattern (24 bp):
TGAAAAACTTTGATGATAGATGGA
Found at i:49286 original size:21 final size:21
Alignment explanation
Indices: 49269--49321 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
49259 CATTGGACCT
49269 AATGGCATCTTCAATGGATCA
1 AATGGCATCTTCAATGGATCA
* *
49290 AATGGCATATTTAATGGATCA
1 AATGGCATCTTCAATGGATCA
49311 AATGGCATCTT
1 AATGGCATCTT
49322 TGGCATCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (21 bp):
AATGGCATCTTCAATGGATCA
Found at i:53797 original size:21 final size:22
Alignment explanation
Indices: 53773--53813 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
53763 GTTTATAATA
*
53773 TTCTTGGGTCA-TCGGGTTATC
1 TTCTCGGGTCATTCGGGTTATC
*
53794 TTCTCGGGTTATTCGGGTTA
1 TTCTCGGGTCATTCGGGTTA
53814 CGAGTTTGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.10, C:0.17, G:0.29, T:0.44
Consensus pattern (22 bp):
TTCTCGGGTCATTCGGGTTATC
Found at i:60006 original size:18 final size:18
Alignment explanation
Indices: 59983--60051 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
59973 TACAAAATAT
59983 TGTTCCACTGCCGCAGGA
1 TGTTCCACTGCCGCAGGA
* * *
60001 TGTTCCACTACTGCA-TA
1 TGTTCCACTGCCGCAGGA
* *
60018 TTGTTGCATTGCCGCAGGA
1 -TGTTCCACTGCCGCAGGA
* *
60037 TTTTCCGCTGCCGCA
1 TGTTCCACTGCCGCA
60052 AGAACCTTTG
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
17 1 0.03
18 35 0.95
19 1 0.03
ACGTcount: A:0.16, C:0.30, G:0.23, T:0.30
Consensus pattern (18 bp):
TGTTCCACTGCCGCAGGA
Found at i:68436 original size:15 final size:16
Alignment explanation
Indices: 68416--68445 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
68406 ACATTTAAAG
68416 AAAAGAA-AGAAAAAA
1 AAAAGAACAGAAAAAA
68431 AAAAGAACAGAAAAA
1 AAAAGAACAGAAAAA
68446 TAACGAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.83, C:0.03, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAGAACAGAAAAAA
Found at i:68691 original size:53 final size:53
Alignment explanation
Indices: 68629--68735 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
68619 AAGCTCTCGC
68629 CTTGCTTCTTGGGGTATTCTATCACAAAATCTGCTATGCAATCTCTGTTAGCA
1 CTTGCTTCTTGGGGTATTCTATCACAAAATCTGCTATGCAATCTCTGTTAGCA
68682 CTTGCTTCTTGGGGTATTCTATCACAAAATCTGCTATGCAATCTCTGTTAGCA
1 CTTGCTTCTTGGGGTATTCTATCACAAAATCTGCTATGCAATCTCTGTTAGCA
68735 C
1 C
68736 CTCATGATTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTGCTTCTTGGGGTATTCTATCACAAAATCTGCTATGCAATCTCTGTTAGCA
Found at i:72977 original size:154 final size:154
Alignment explanation
Indices: 72690--74475 Score: 2771
Period size: 154 Copynumber: 11.6 Consensus size: 154
72680 GTTCATTTGG
72690 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* * * * * * *
72755 TTCACAGTGAACTAATCTCACAAAAATGATTATAGTTAGTCCATAAAAAATGGAAGGAAAAGCTT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
72820 TGAGGTTTGCCAAATCGAAGACGA
131 TGAGGTTTGCCAAATCGAAGACGA
* * * * * *
72844 TTCAATAC-GTTACTAATGGGCCCCGATAGGCCCGAAATAACAAGTGTTTCAAATGAGTTAAAAA
1 TTCAAAACGGAT-CTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
* *
72908 CTTCATAGTAGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACA
65 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACA
72973 TTGAGGTTTGCCAAATCGAAGACGA
130 TTGAGGTTTGCCAAATCGAAGACGA
* *
72998 TTCAAAACGGATCTAATGGGCACCGATAGACTCAAAATATTA-AAGTGTTCCAAATGAGCTAAAA
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATA--ACAAGTGTTCCAAATGAGCTAAAA
* * * *
73062 ACTTCACATTGGACTAATATCACCAAAATGATTATAGTTAGGCCATAAACAATGGAACGAAAAGC
64 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAAC
*
73127 ATTGAGGGTTGCCAAATCGAAGACGA
129 ATTGAGGTTTGCCAAATCGAAGACGA
73153 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* * * * * *
73218 TTCACAGTGGACTAATCTCACAAAAATGATTATAGTTAGTCCATAAAAAATGGAAGGAAAAGCTT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
73283 TGAGGTTTGCCAAATCGAAGACGA
131 TGAGGTTTGCCAAATCGAAGACGA
* * * *
73307 TTCAATACGTCA-CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGATCTAAAAA
1 TTCAAAACG-GATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
* * **
73371 TTTCACAGTAGACTAATCTCACCAAAATGATTATAGTTAGAACATAAACAATGGAAAG-AAAACA
65 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACA
*
73435 TTGAGATTTGCCAAATCGAAGACGA
130 TTGAGGTTTGCCAAATCGAAGACGA
* * * *
73460 TTCAAAACGGATCTAATGGGCCCAGGTAGTCTCAAAATAACAAGTGTTCCAAATGAGTTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* * *
73525 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAATAATGGAAAGGAAAGCAT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
* ** *
73590 TAAGGTTTGAAAAATCGAAGGCGA
131 TGAGGTTTGCCAAATCGAAGACGA
* * *
73614 TTCAATAC-G-TCAGTAATGGGCCCCGATTGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAA
1 TTCAAAACGGATC--TAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAA
* *
73677 ACTTCACAGTAGACTAATCTCACCAAAATGATTATAGTTAAGCCATAAACAATGGAAAGAAAAAC
64 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAAC
* *
73742 CTTGATGTTTGTCC-AATCGAAGACGA
129 ATTGAGGTTTG-CCAAATCGAAGACGA
*
73768 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAATTGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
73833 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
73898 TGAGGTTTGCCAAATCGAAGACGA
131 TGAGGTTTGCCAAATCGAAGACGA
73922 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* * *
73987 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAAA-AATGGAAAGGAAAAGCT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAA-GAAAAACA
74051 TTGAGGTTTGCCAAATCGAAGACGA
130 TTGAGGTTTGCCAAATCGAAGACGA
* * * * *
74076 TTCAATACGTCA-CTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTTCAAATGAGTTAAAAA
1 TTCAAAACG-GATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAA
*
74140 CTTCACAGTAGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACA
65 CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACA
74205 TTGAGGTTTGCCAAATCGAAGACGA
130 TTGAGGTTTGCCAAATCGAAGACGA
* *
74230 TTCAAAACGGATCTAATGGGCACCGATAGGCTCAAAATAAAAAGTGTTCCAAATGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
* *
74295 TTCATATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
66 TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
* *
74360 TAAGGTTTGCCAAATCGAAAACGA
131 TGAGGTTTGCCAAATCGAAGACGA
*
74384 TTCAAAACGGATCTAATGGGCCTCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
1 TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
*
74449 TTCACAGTGGACTAATCTCACAAAAAT
66 TTCACAGTGGACTAATCTCACCAAAAT
Statistics
Matches: 1484, Mismatches: 130, Indels: 36
0.90 0.08 0.02
Matches are distributed among these distances:
152 3 0.00
153 150 0.10
154 1174 0.79
155 154 0.10
156 3 0.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (154 bp):
TTCAAAACGGATCTAATGGGCCCCGATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC
TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAACAT
TGAGGTTTGCCAAATCGAAGACGA
Done.