Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023961.1 Corchorus olitorius cultivar O-4 contig23994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3211
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:548 original size:50 final size:50

Alignment explanation


    Indices: 494--643  Score: 237
    Period size: 50  Copynumber: 3.0  Consensus size: 50

        484 CTTCAATGTC

                                 *   *              * *       
        494 CTTTGAAAAGCGAATTTTGATTTTGGACTCACAAATGGAATGTAATTTTA
          1 CTTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGCAATTTTA

                       *                                      
        544 CTTTGAAAAGCAAATTTTGATCTTGAACTCACAAATGGAAAGCAATTTTA
          1 CTTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGCAATTTTA

                                    *      *                  
        594 CTTTGAAAAGCGAATTTTGATCTTAAACTCATAAATGGAAAGCAATTTTA
          1 CTTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGCAATTTTA

        644 TTGTAAAACT


Statistics
Matches: 92,  Mismatches: 8, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  50   92  1.00

ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35


Consensus pattern (50 bp):   
CTTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGCAATTTTA
Done.