Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023962.1 Corchorus olitorius cultivar O-4 contig23995, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1248
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:169 original size:76 final size:74

Alignment explanation


    Indices: 89--269  Score: 292
    Period size: 76  Copynumber: 2.4  Consensus size: 74

         79 TTGAAACATC

                           *           *                                     
         89 TTTTGATTAAAAC-CGTCATTCTTTTGTTCACAGCTCGAAATCATAGTTTTGATTAAAACTGATT
          1 TTTTGATTAAAACTCATCATTC-TTTGCTCACAGCTCGAAATCATAGTTTTGATTAAAACTGATT

                        
        153 TTTTTTTGAAAA
         65 TTTTTTT--AAA

                                  *                                          
        165 TTTTGATTAAAACTCATCATTCCTTGCTCACAGCTCGAAATCATAGTTTTGATTAAAACTGATTT
          1 TTTTGATTAAAACTCATCATTCTTTGCTCACAGCTCGAAATCATAGTTTTGATTAAAACTGATTT

                     
        230 TTTTTTAAA
         66 TTTTTTAAA

                                           
        239 TTTTGATTAAAACTCATCATTCCTTTGCTCA
          1 TTTTGATTAAAACTCATCATT-CTTTGCTCA

        270 TAGTCCAGAT


Statistics
Matches: 99,  Mismatches: 4, Indels: 5
        0.92            0.04        0.05

Matches are distributed among these distances:
  74   24  0.24
  75    8  0.08
  76   60  0.61
  77    7  0.07

ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44


Consensus pattern (74 bp):   
TTTTGATTAAAACTCATCATTCTTTGCTCACAGCTCGAAATCATAGTTTTGATTAAAACTGATTT
TTTTTTAAA
Done.