Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023965.1 Corchorus olitorius cultivar O-4 contig23998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6705

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2782--2877
6
18.8
5
77
17
58
78
5
2
14
1.02
2779--2814
14
2.5
15
91
8
58
80
0
0
19
0.71
2782--2877
20
4.7
19
75
14
68
78
5
2
14
1.02
2779--2865
11
8.2
10
73
14
59
80
3
2
13
0.94
2773--2849
39
2.0
40
84
2
102
79
3
0
16
0.88
2778--2863
25
3.5
24
75
20
63
79
4
2
13
1.00
2818--2863
24
1.9
24
90
0
74
82
6
4
6
0.94
3474--3623
50
3.0
50
91
0
228
32
17
14
36
1.89
4297--4638
50
6.8
50
90
2
488
29
26
14
29
1.95
4297--4638
99
3.4
100
90
2
497
29
26
14
29
1.95
4297--4638
149
2.2
153
88
3
503
29
26
14
29
1.95
5147--5184
19
2.0
19
89
0
58
15
15
31
36
1.90
5471--5497
10
2.7
10
100
0
54
74
14
0
11
1.08

Tables:   1

The End!