Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023966.1 Corchorus olitorius cultivar O-4 contig23999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5885
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:1842 original size:27 final size:27

Alignment explanation


    Indices: 1781--1842  Score: 72
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       1771 GTGTTCATGA

                 *          *          
       1781 TTTAGGGGTTACTAACTCCCTTTTTTC
          1 TTTAGAGGTTACTAACACCCTTTTTTC

               *              *        
       1808 TTTTGAGGTTACTAACACTCTTTTTT-
          1 TTTAGAGGTTACTAACACCCTTTTTTC

                     
       1834 TTTCAGAGG
          1 TTT-AGAGG

       1843 GACAATACTT


Statistics
Matches: 29,  Mismatches: 5, Indels: 2
        0.81            0.14        0.06

Matches are distributed among these distances:
  26    3  0.10
  27   26  0.90

ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48


Consensus pattern (27 bp):   
TTTAGAGGTTACTAACACCCTTTTTTC
Done.