Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01023967.1 Corchorus olitorius cultivar O-4 contig24000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1508
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31


Found at i:1116 original size:21 final size:21

Alignment explanation


    Indices: 1090--1181  Score: 141
    Period size: 21  Copynumber: 4.4  Consensus size: 21

       1080 TGCTAGAAGT

                                  
       1090 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
       1111 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1132 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       1153 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       1174 TCATTGGA
          1 TCATTGGA

       1182 ATTGCCTAAG


Statistics
Matches: 66,  Mismatches: 4, Indels: 2
        0.92            0.06        0.03

Matches are distributed among these distances:
  20    2  0.03
  21   64  0.97

ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.