Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002397.1 Corchorus olitorius cultivar O-4 contig02397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1137
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32


Found at i:404 original size:21 final size:21

Alignment explanation


    Indices: 378--494  Score: 182
    Period size: 21  Copynumber: 5.6  Consensus size: 21

        368 AAGATGCTAG

                                  
        378 AAGTTCATTGGAGCAA-GTTCC
          1 AAGTTCATTGGAG-AAGGTTCC

                                 
        399 AAGTTCATTGGAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

                                 
        420 AAGTTCATTGGAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

                      *          
        441 AAGTTCATTGCAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

               *               * 
        462 AAGATCATTGGAGAAGGTTTC
          1 AAGTTCATTGGAGAAGGTTCC

               *        
        483 AAGCTCATTGGA
          1 AAGTTCATTGGA

        495 ATTGCCTAAG


Statistics
Matches: 90,  Mismatches: 5, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   88  0.98

ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28


Consensus pattern (21 bp):   
AAGTTCATTGGAGAAGGTTCC

Done.